SMTL ID : 6n02.1

CO-bound Sperm Whale Myoglobin, room temperature structure, first 2 degrees of 5 degree total oscillation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 19 residues within 4Å: Chain A: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.73, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139 Ligands: CMO.2 25 PLIP interactions: 25 interactions with chain A, Hydrophobic interactions: A:T.40, A:F.44, A:F.44, A:F.44, A:T.68, A:V.69, A:A.72, A:L.73, A:L.73, A:L.90, A:I.100, A:Y.104, A:Y.104, A:L.105, A:I.108, A:I.108, A:F.139 Hydrogen bonds: A:S.93 Salt bridges: A:R.46, A:H.65, A:H.94, A:H.98 pi-Stacking: A:H.94, A:H.98 Metal complexes: A:H.94

1 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.2: 3 residues within 4Å: Chain A: F.44, H.65 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: A.58, S.59, E.60, D.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.59, A:E.60, A:D.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wierman, J.L. et al., Fixed-target serial oscillation crystallography at room temperature. IUCrJ (2019)

Release Date

2019-03-27

Peptides

Myoglobin, CO-bound: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin, CO-bound

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