SMTL ID : 6n1x.1

BshA from Staphylococcus aureus complexed with UDP and N-acetylglucosamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 16 residues within 4Å: Chain A: G.16, G.17, I.20, V.206, N.208, K.213, G.237, K.263, Q.264, V.267, E.284, G.287, L.288, T.289, E.292 Ligands: NDG.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.206 Hydrogen bonds: A:G.17, A:N.208, A:Q.264, A:Q.264, A:Y.271, A:E.284, A:L.288, A:T.289, A:E.292 Salt bridges: A:K.213, A:K.213 pi-Cation interactions: A:K.263 UDP.3: 16 residues within 4Å: Chain B: G.16, G.17, I.20, V.206, N.208, K.213, G.237, K.263, Q.264, V.267, E.284, G.287, L.288, T.289, E.292 Ligands: NDG.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:V.206 Hydrogen bonds: B:G.17, B:N.208, B:Q.264, B:Q.264, B:Y.271, B:E.284, B:L.288, B:T.289, B:E.292 Salt bridges: B:K.213, B:K.213 pi-Cation interactions: B:K.263 UDP.5: 16 residues within 4Å: Chain C: G.16, G.17, I.20, V.206, N.208, K.213, G.237, K.263, Q.264, V.267, E.284, G.287, L.288, T.289, E.292 Ligands: NDG.6 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:V.206 Hydrogen bonds: C:G.17, C:N.208, C:Q.264, C:Q.264, C:E.284, C:L.288, C:T.289, C:E.292 Salt bridges: C:K.213, C:K.213 pi-Cation interactions: C:K.263 UDP.7: 16 residues within 4Å: Chain D: G.16, G.17, I.20, V.206, N.208, K.213, G.237, K.263, Q.264, V.267, E.284, G.287, L.288, T.289, E.292 Ligands: NDG.8 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:V.206 Hydrogen bonds: D:G.17, D:N.208, D:Q.264, D:Q.264, D:E.284, D:L.288, D:T.289, D:E.292 Salt bridges: D:K.213, D:K.213 pi-Cation interactions: D:K.263

4 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.2: 12 residues within 4Å: Chain A: G.17, S.18, H.122, V.152, N.175, K.283, E.284, S.285, F.286, G.287, L.288 Ligands: UDP.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.18, A:H.122, A:N.175, A:N.175, A:E.284, A:S.285, A:F.286, A:G.287, A:L.288 NDG.4: 12 residues within 4Å: Chain B: G.17, S.18, H.122, V.152, N.175, K.283, E.284, S.285, F.286, G.287, L.288 Ligands: UDP.3 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.18, B:H.122, B:N.175, B:N.175, B:E.284, B:S.285, B:F.286, B:G.287, B:L.288 NDG.6: 12 residues within 4Å: Chain C: G.17, S.18, H.122, V.152, N.175, K.283, E.284, S.285, F.286, G.287, L.288 Ligands: UDP.5 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.18, C:N.175, C:N.175, C:E.284, C:E.284, C:S.285, C:F.286, C:G.287, C:L.288 NDG.8: 12 residues within 4Å: Chain D: G.17, S.18, H.122, V.152, N.175, K.283, E.284, S.285, F.286, G.287, L.288 Ligands: UDP.7 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.18, D:N.175, D:N.175, D:E.284, D:E.284, D:S.285, D:F.286, D:G.287, D:L.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Royer, C.J. et al., A structural and functional analysis of the glycosyltransferase BshA from Staphylococcus aureus: Insights into the reaction mechanism and regulation of bacillithiol production. Protein Sci. (2019)

Release Date

2019-08-21

Peptides

Glycosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Glycosyltransferase