SMTL ID : 6n7p.1

S. cerevisiae spliceosomal E complex (UBC4)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.6, C.9, H.24, H.30 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.6, B:C.9, B:H.24, B:H.30 ZN.2: 6 residues within 4Å: Chain I: C.45, S.47, Y.48, C.53, C.68, H.72 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.45, I:C.53, I:C.68, I:H.72 ZN.3: 4 residues within 4Å: Chain I: C.201, C.204, H.220, H.226 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.201, I:C.204, I:H.220, I:H.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., A unified mechanism for intron and exon definition and back-splicing. Nature (2019)

Release Date

2019-09-18

Peptides

U1 small nuclear ribonucleoprotein 70 kDa homolog: A
U1 small nuclear ribonucleoprotein C: B
U1 small nuclear ribonucleoprotein A: C
U1 small nuclear ribonucleoprotein component PRP42: D
Pre-mRNA-processing factor 39: E
Protein NAM8: F
56 kDa U1 small nuclear ribonucleoprotein component: G
U1 small nuclear ribonucleoprotein component SNU71,U1 small nuclear ribonucleoprotein component SNU71,Snu71: H
Protein LUC7: I
Pre-mRNA-processing protein PRP40: J
Small nuclear ribonucleoprotein-associated protein B: K
Small nuclear ribonucleoprotein Sm D1: L
Small nuclear ribonucleoprotein Sm D2: M
Small nuclear ribonucleoprotein Sm D3: N
Small nuclear ribonucleoprotein E: O
Small nuclear ribonucleoprotein F: P
Small nuclear ribonucleoprotein G: Q
Nuclear cap-binding protein complex subunit 1: T
Nuclear cap-binding protein subunit 2: U

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

T
X

U
Y

U1 small nuclear ribonucleoprotein 70 kDa homolog

U1 small nuclear ribonucleoprotein C

U1 small nuclear ribonucleoprotein A

U1 small nuclear ribonucleoprotein component PRP42

Pre-mRNA-processing factor 39

Protein NAM8

56 kDa U1 small nuclear ribonucleoprotein component

U1 small nuclear ribonucleoprotein component SNU71,U1 small nuclear ribonucleoprotein component SNU71,Snu71

Protein LUC7

Pre-mRNA-processing protein PRP40

Small nuclear ribonucleoprotein-associated protein B

Small nuclear ribonucleoprotein Sm D1

Small nuclear ribonucleoprotein Sm D2

Small nuclear ribonucleoprotein Sm D3

Small nuclear ribonucleoprotein E

Small nuclear ribonucleoprotein F

Small nuclear ribonucleoprotein G

Nuclear cap-binding protein complex subunit 1

Nuclear cap-binding protein subunit 2

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