SMTL ID : 6n8z.1

HSP104DWB extended conformation

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

12 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)(Non-covalent)

ATP.1: 15 residues within 4Å: Chain A: P.180, V.181, I.182, E.208, P.209, G.210, I.211, G.212, K.213, T.214, A.215, I.346, P.384, D.385, L.388 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.182, A:I.182, A:G.210, A:I.211, A:T.214, A:A.215, A:D.385 Salt bridges: A:K.213, A:K.213 ATP.2: 14 residues within 4Å: Chain A: E.574, Q.578, L.610, S.611, G.612, S.613, G.614, K.615, T.616, E.617, N.723, F.767, L.770, A.820 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.578, A:G.612, A:S.613, A:T.616, A:T.616, A:T.616, A:E.617, A:N.723 Salt bridges: A:K.615, A:K.615 ATP.3: 15 residues within 4Å: Chain B: P.180, V.181, I.182, P.209, G.210, I.211, G.212, K.213, T.214, A.215, I.346, L.350, P.384, D.385, L.388 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:P.180, B:I.182, B:G.210, B:I.211, B:G.212, B:K.213, B:T.214, B:T.214, B:A.215, B:D.385 Salt bridges: B:K.213, B:K.213 ATP.4: 17 residues within 4Å: Chain B: E.574, V.575, V.576, Q.578, S.611, G.612, S.613, G.614, K.615, T.616, E.617, N.723, L.770, I.778, A.820, R.821, N.824 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:V.576, B:V.576, B:G.612, B:S.613, B:G.614, B:K.615, B:T.616, B:T.616, B:E.617, B:N.824 Salt bridges: B:K.615, B:R.821, B:R.821 ATP.5: 13 residues within 4Å: Chain C: P.180, V.181, I.182, P.209, G.210, G.212, K.213, T.214, A.215, I.346, L.350, P.384, L.388 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:I.182, C:I.182, C:G.210, C:G.212, C:K.213, C:T.214, C:T.214, C:T.214, C:A.215 Salt bridges: C:K.213, C:K.213 ATP.6: 17 residues within 4Å: Chain B: R.760 Chain C: E.574, V.575, V.576, S.611, G.612, S.613, G.614, K.615, T.616, E.617, N.723, L.770, I.778, R.782, A.820, R.821 14 PLIP interactions: 12 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:V.576, C:V.576, C:G.612, C:G.614, C:K.615, C:T.616, C:E.617, C:E.617 Salt bridges: C:K.615, C:K.615, C:R.821, C:R.821, B:R.760, B:R.760 ATP.7: 16 residues within 4Å: Chain C: R.760 Chain D: E.574, V.575, V.576, S.611, G.612, S.613, G.614, K.615, T.616, E.617, N.723, L.770, I.778, A.820, R.821 16 PLIP interactions: 15 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:V.576, D:V.576, D:G.612, D:G.614, D:K.615, D:T.616, D:T.616, D:E.617, D:N.723, D:E.785, D:R.821 Salt bridges: D:K.615, D:R.821, D:R.821, D:R.821, C:R.760 ATP.8: 17 residues within 4Å: Chain C: R.302 Chain D: D.179, P.180, V.181, I.182, R.184, P.209, G.210, I.211, G.212, K.213, T.214, A.215, I.346, L.350, P.384, L.388 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.179, D:I.182, D:I.182, D:I.211, D:G.212, D:K.213, D:T.214, D:T.214, D:T.214, D:A.215, C:R.302 Salt bridges: D:K.213, D:K.213 ATP.9: 20 residues within 4Å: Chain D: R.302, A.325, R.328, R.329 Chain E: D.179, P.180, V.181, I.182, R.184, P.209, G.210, I.211, G.212, K.213, T.214, A.215, I.346, L.350, P.384, L.388 16 PLIP interactions: 11 interactions with chain E, 5 interactions with chain D Hydrogen bonds: E:I.182, E:I.182, E:G.210, E:G.212, E:K.213, E:T.214, E:T.214, E:T.214, E:A.215, D:R.302, D:R.328 Salt bridges: E:K.213, E:K.213, D:R.328, D:R.328, D:R.329 ATP.10: 19 residues within 4Å: Chain D: R.760 Chain E: E.574, V.575, V.576, Q.578, L.610, S.611, G.612, S.613, G.614, K.615, T.616, E.617, L.770, I.778, R.782, A.820, R.821, N.824 14 PLIP interactions: 13 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:V.576, E:V.576, E:G.612, E:G.614, E:K.615, E:T.616, E:T.616, E:E.617, E:R.821, E:N.824, D:R.760 Salt bridges: E:K.615, E:K.615, E:R.821 ATP.11: 13 residues within 4Å: Chain E: S.301, R.302, A.325, F.326, R.328, R.329 Chain F: P.209, G.210, I.346, L.350, P.384, D.385, L.388 10 PLIP interactions: 8 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:S.301, E:R.302, E:R.328, E:R.328, F:G.210, F:P.384 Salt bridges: E:R.328, E:R.329, E:R.329, E:R.329 ATP.12: 18 residues within 4Å: Chain F: E.574, V.576, Q.578, L.610, S.611, G.612, S.613, G.614, K.615, T.616, E.617, D.681, N.723, L.770, I.778, R.782, A.820, R.821 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:V.576, F:V.576, F:Q.578, F:G.612, F:S.613, F:G.614, F:K.615, F:K.615, F:T.616, F:E.617, F:N.723 Salt bridges: F:R.821, F:R.821

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S. et al., Cryo-EM Structures of the Hsp104 Protein Disaggregase Captured in the ATP Conformation. Cell Rep (2019)

Release Date

2019-01-02

Peptides

Heat shock protein 104: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Heat shock protein 104

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