- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-2-2-mer
- Ligands
- 14 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 15 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA.2: 3 residues within 4Å:- Chain A: Q.51, N.118, Q.121
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.4: 4 residues within 4Å:- Chain A: N.169, G.173, M.175
- Chain G: P.561
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.8: 3 residues within 4Å:- Chain A: T.256, Y.257, N.258
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.11: 1 residues within 4Å:- Chain A: N.633
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.15: 2 residues within 4Å:- Chain A: N.884, T.886
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.18: 5 residues within 4Å:- Chain F: Q.51, D.55, N.118, Q.121, D.122
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.20: 5 residues within 4Å:- Chain A: Q.558, P.561
- Chain F: N.169, G.173, M.175
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.24: 3 residues within 4Å:- Chain F: T.256, Y.257, N.258
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.26: 1 residues within 4Å:- Chain F: N.633
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.29: 2 residues within 4Å:- Chain F: N.884, T.886
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.32: 5 residues within 4Å:- Chain G: Q.51, D.55, N.118, Q.121, D.122
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.34: 3 residues within 4Å:- Chain G: N.169, G.173, M.175
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.35: 2 residues within 4Å:- Chain G: F.179, N.180
1 PLIP interactions:1 interactions with chain G- Hydrophobic interactions: G:F.179
NAG-NAG-BMA.39: 3 residues within 4Å:- Chain G: N.633, N.661, Y.663
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA.43: 3 residues within 4Å:- Chain G: N.884, T.886, Q.1023
No protein-ligand interaction detected (PLIP)- 8 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN-MAN.3: 6 residues within 4Å:- Chain A: G.135, A.138, N.139, E.263, I.264, Y.288
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN-MAN.5: 5 residues within 4Å:- Chain A: F.179, N.180
- Chain C: D.106, W.108
- Chain G: S.542
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN-MAN.6: 6 residues within 4Å:- Chain A: T.32, D.34, G.36, N.236, L.239, M.254
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN-MAN.9: 8 residues within 4Å:- Chain A: N.424, K.427, K.601
- Chain G: K.516, R.525, E.527, G.552, Y.554
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:K.516
NAG-NAG-BMA-MAN-MAN-MAN.19: 6 residues within 4Å:- Chain F: G.135, A.138, N.139, E.263, I.264, Y.288
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN-MAN.21: 6 residues within 4Å:- Chain A: V.541, S.542
- Chain D: G.105, W.108
- Chain F: F.179, N.180
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN-MAN.22: 6 residues within 4Å:- Chain F: T.32, V.33, D.34, N.236, L.239, M.254
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN-MAN.33: 6 residues within 4Å:- Chain G: G.135, A.138, N.139, E.263, I.264, Y.288
No protein-ligand interaction detected (PLIP)- 5 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN.7: 3 residues within 4Å:- Chain A: N.250
- Chain B: D.33, S.69
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.69
NAG-NAG-BMA-MAN-MAN.16: 10 residues within 4Å:- Chain A: S.790, P.1175, P.1221, Q.1222, V.1223, Y.1225, Q.1226, N.1227
- Chain F: S.1005, E.1006
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.23: 4 residues within 4Å:- Chain E: I.54, S.69, G.70
- Chain F: N.250
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:S.69, E:G.70
NAG-NAG-BMA-MAN-MAN.30: 9 residues within 4Å:- Chain F: S.790, P.1175, P.1221, Q.1222, V.1223, Y.1225, Q.1226, N.1227
- Chain G: E.1006
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.44: 9 residues within 4Å:- Chain A: S.1005, E.1006
- Chain G: S.790, P.1175, P.1221, V.1223, Y.1225, Q.1226, N.1227
No protein-ligand interaction detected (PLIP)- 1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.45: 2 residues within 4Å:- Chain A: A.605, N.606
No protein-ligand interaction detected (PLIP)NAG.46: 1 residues within 4Å:- Chain F: N.788
No protein-ligand interaction detected (PLIP)NAG.47: 2 residues within 4Å:- Chain G: T.32, N.250
No protein-ligand interaction detected (PLIP)NAG.48: 2 residues within 4Å:- Chain G: H.500, N.501
No protein-ligand interaction detected (PLIP)NAG.49: 2 residues within 4Å:- Chain G: N.606, D.607
1 PLIP interactions:1 interactions with chain G- Hydrophobic interactions: G:D.607
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walls, A.C. et al., Unexpected Receptor Functional Mimicry Elucidates Activation of Coronavirus Fusion. Cell (2019)
- Release Date
- 2019-02-06
- Peptides
- Spike glycoprotein: AFG
LCA60 light chain: BE
LCA60 heavy chain: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AF
BG
CB
LE
EC
HD
D
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-2-2-mer
- Ligands
- 14 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 15 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walls, A.C. et al., Unexpected Receptor Functional Mimicry Elucidates Activation of Coronavirus Fusion. Cell (2019)
- Release Date
- 2019-02-06
- Peptides
- Spike glycoprotein: AFG
LCA60 light chain: BE
LCA60 heavy chain: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AF
BG
CB
LE
EC
HD
D