- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-1-1-mer
- Ligands
- 27 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN.2: 6 residues within 4Å:- Chain A: G.135, A.138, N.139, E.263, I.264, Y.288
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.5: 5 residues within 4Å:- Chain A: D.34, G.36, N.236, L.239, M.254
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.13: 11 residues within 4Å:- Chain A: S.790, P.1175, P.1221, Q.1222, V.1223, Y.1225, Q.1226, N.1227
- Chain B: Q.1002, S.1005, E.1006
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.1221
NAG-NAG-BMA-MAN-MAN.18: 7 residues within 4Å:- Chain A: S.542, K.557
- Chain B: F.179, N.180
- Chain D: G.105, D.106, W.108
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:K.557
- Hydrogen bonds: D:D.106
NAG-NAG-BMA-MAN-MAN.30: 6 residues within 4Å:- Chain C: G.135, A.138, N.139, E.263, I.264, Y.288
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.38: 8 residues within 4Å:- Chain A: S.1005, E.1006
- Chain C: S.790, P.1221, V.1223, Y.1225, Q.1226, N.1227
No protein-ligand interaction detected (PLIP)- 1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN.19: 6 residues within 4Å:- Chain B: D.34, G.36, P.37, N.236, L.239, M.254
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN.27: 8 residues within 4Å:- Chain B: S.790, P.1221, Q.1222, V.1223, Y.1225, Q.1226, N.1227
- Chain C: E.1006
No protein-ligand interaction detected (PLIP)- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.39: 2 residues within 4Å:- Chain A: N.80, V.343
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.343
- Hydrogen bonds: A:N.80
NAG.40: 1 residues within 4Å:- Chain A: N.250
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.250
NAG.41: 1 residues within 4Å:- Chain A: N.501
No protein-ligand interaction detected (PLIP)NAG.42: 3 residues within 4Å:- Chain A: F.604, A.605, N.606
No protein-ligand interaction detected (PLIP)NAG.43: 1 residues within 4Å:- Chain B: N.788
No protein-ligand interaction detected (PLIP)NAG.44: 2 residues within 4Å:- Chain C: F.179, N.180
No protein-ligand interaction detected (PLIP)NAG.45: 2 residues within 4Å:- Chain C: T.32, N.250
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:T.32
NAG.46: 3 residues within 4Å:- Chain C: A.605, N.606, D.607
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:A.605
NAG.47: 1 residues within 4Å:- Chain C: N.788
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walls, A.C. et al., Unexpected Receptor Functional Mimicry Elucidates Activation of Coronavirus Fusion. Cell (2019)
- Release Date
- 2019-02-06
- Peptides
- Spike glycoprotein: ABC
LCA60 heavy chain: D
LCA60 light chain: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
HE
L
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-1-1-mer
- Ligands
- 27 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walls, A.C. et al., Unexpected Receptor Functional Mimicry Elucidates Activation of Coronavirus Fusion. Cell (2019)
- Release Date
- 2019-02-06
- Peptides
- Spike glycoprotein: ABC
LCA60 heavy chain: D
LCA60 light chain: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
HE
L