SMTL ID : 6ndd.6 (5 other biounits)

RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH MANGANESE BOUND

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain B: Y.8, N.9, E.45 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.8, B:N.9 SO4.2: 8 residues within 4Å: Chain B: R.92, K.114 Chain C: S.35, D.99, T.101, G.135 Ligands: MN.3, NA.6 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:T.101, B:R.92 Salt bridges: B:K.114 SO4.4: 4 residues within 4Å: Chain C: Q.108, R.111, K.112, Q.149 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.111, C:K.112

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 7 residues within 4Å: Chain C: D.31, S.33, S.35, T.101, D.134 Ligands: SO4.2, NA.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:S.33, C:S.35, C:D.134

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain C: R.190 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain C: S.33, N.34, S.35 Ligands: SO4.2, MN.3 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.33, C:N.34, C:S.35, C:G.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stetefeld, J. et al., RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH MANGANESE BOUND. To be published

Release Date

2018-12-26

Peptides

Snaclec rhodocetin subunit gamma: A
Snaclec rhodocetin subunit delta: B
Integrin alpha-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
Q

C
R

Snaclec rhodocetin subunit gamma

Snaclec rhodocetin subunit delta

Integrin alpha-2

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