SMTL ID : 6nek.1

Crystal structure of a consensus PDZ domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 11 residues within 4Å: Chain A: R.48, L.81 Chain B: W.3, G.25, R.48, I.49, L.50, S.56, V.57, E.58, G.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.48, A:R.48 Water bridges: A:R.48 EDO.2: 6 residues within 4Å: Chain A: E.5, L.81 Chain B: W.3, E.4, E.5 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.5 EDO.3: 11 residues within 4Å: Chain A: W.3, G.25, R.48, I.49, L.50, S.56, V.57, E.58, G.59 Chain B: R.48, L.81 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.48, B:R.48 Water bridges: B:R.48 EDO.4: 6 residues within 4Å: Chain A: W.3, E.4, E.5 Chain B: E.5, L.81 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Y.J. et al., Consensus PDZ domain. To be published

Release Date

2019-12-25

Peptides

Consensus PDZ domain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Consensus PDZ domain