SMTL ID : 6ner.1

Synthetic Haliangium ochraceum BMC shell

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.59 Å

Oligo State

homo-30-mer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: G.38, G.39, G.153 Chain B: G.38, G.39, G.153 Chain C: G.38, G.39, G.153 6 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: B:G.39, B:G.153, C:G.39, C:G.153, A:G.39, A:G.153 SO4.2: 10 residues within 4Å: Chain D: G.38, G.39, G.153 Chain E: G.38, G.39, G.153 Chain F: G.38, G.39, G.152, G.153 6 PLIP interactions: 2 interactions with chain E, 2 interactions with chain D, 2 interactions with chain F Hydrogen bonds: E:G.39, E:G.153, D:G.39, D:G.153, F:G.39, F:G.153 SO4.3: 11 residues within 4Å: Chain G: G.38, G.39, G.152, G.153 Chain H: G.39, G.152, G.153 Chain I: G.38, G.39, G.152, G.153 6 PLIP interactions: 2 interactions with chain I, 2 interactions with chain G, 2 interactions with chain H Hydrogen bonds: I:G.39, I:G.153, G:G.39, G:G.153, H:G.39, H:G.153 SO4.4: 10 residues within 4Å: Chain J: G.38, G.39, G.152, G.153 Chain K: G.39, G.152, G.153 Chain L: G.39, G.152, G.153 6 PLIP interactions: 2 interactions with chain K, 2 interactions with chain J, 2 interactions with chain L Hydrogen bonds: K:G.39, K:G.153, J:G.39, J:G.153, L:G.39, L:G.153 SO4.5: 9 residues within 4Å: Chain M: G.39, G.152, G.153 Chain N: G.39, G.152, G.153 Chain O: G.39, G.152, G.153 6 PLIP interactions: 2 interactions with chain O, 2 interactions with chain N, 2 interactions with chain M Hydrogen bonds: O:G.39, O:G.153, N:G.39, N:G.153, M:G.39, M:G.153 SO4.6: 9 residues within 4Å: Chain P: G.39, G.152, G.153 Chain Q: G.39, G.152, G.153 Chain R: G.39, G.152, G.153 5 PLIP interactions: 2 interactions with chain P, 2 interactions with chain R, 1 interactions with chain Q Hydrogen bonds: P:G.39, P:G.153, R:G.39, R:G.153, Q:G.39 SO4.7: 11 residues within 4Å: Chain S: G.38, G.39, G.152, G.153 Chain T: G.38, G.39, G.152, G.153 Chain U: G.38, G.39, G.153 6 PLIP interactions: 2 interactions with chain U, 2 interactions with chain S, 2 interactions with chain T Hydrogen bonds: U:G.39, U:G.153, S:G.39, S:G.153, T:G.39, T:G.153 SO4.8: 10 residues within 4Å: Chain V: G.38, G.39, G.152, G.153 Chain W: G.39, G.152, G.153 Chain X: G.39, G.152, G.153 6 PLIP interactions: 2 interactions with chain W, 2 interactions with chain V, 2 interactions with chain X Hydrogen bonds: W:G.39, W:G.153, V:G.39, V:G.153, X:G.39, X:G.153 SO4.9: 10 residues within 4Å: Chain 0: G.38, G.39, G.153 Chain Y: G.38, G.39, G.152, G.153 Chain Z: G.38, G.39, G.153 6 PLIP interactions: 2 interactions with chain Z, 2 interactions with chain Y, 2 interactions with chain 0 Hydrogen bonds: Z:G.39, Z:G.153, Y:G.39, Y:G.153, 0:G.39, 0:G.153 SO4.10: 11 residues within 4Å: Chain 1: G.38, G.39, G.152, G.153 Chain 2: G.38, G.39, G.152, G.153 Chain 3: G.39, G.152, G.153 6 PLIP interactions: 2 interactions with chain 1, 2 interactions with chain 3, 2 interactions with chain 2 Hydrogen bonds: 1:G.39, 1:G.153, 3:G.39, 3:G.153, 2:G.39, 2:G.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sutter, M. et al., Structural Characterization of a Synthetic Tandem-Domain Bacterial Microcompartment Shell Protein Capable of Forming Icosahedral Shell Assemblies. ACS Synth Biol (2019)

Release Date

2019-04-03

Peptides

BMC-H tandem fusion protein: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

BMC-H tandem fusion protein