SMTL ID : 6nie.1 (3 other biounits)

BesD with Fe(II), chloride, and alpha-ketoglutarate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x LYS: LYSINE(Non-covalent)

LYS.1: 13 residues within 4Å: Chain A: L.69, R.77, E.123, L.126, H.137, H.140, W.141, N.222, T.224, W.241, W.242 Ligands: CL.3, AKG.4 13 PLIP interactions: 11 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: A:L.126, A:W.242, A:W.242 Hydrogen bonds: A:W.141, A:N.222, A:N.222, K.1, K.1 Water bridges: A:D.143, A:T.224 Salt bridges: A:R.77, A:H.137, A:H.140

1 x FE2: FE (II) ION(Non-covalent)

FE2.2: 4 residues within 4Å: Chain A: H.140, H.207 Ligands: CL.3, AKG.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.140, A:H.207

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 8 residues within 4Å: Chain A: H.140, W.141, G.142, T.202, H.207 Ligands: LYS.1, FE2.2, AKG.4 Ligand excluded by PLIP

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.4: 13 residues within 4Å: Chain A: H.137, H.140, I.149, L.163, Y.198, H.207, T.209, R.218, I.220, N.222 Ligands: LYS.1, FE2.2, CL.3 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:N.222 Water bridges: A:Q.130, A:H.137 Salt bridges: A:H.137, A:H.140, A:R.218, K.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neugebauer, M.E. et al., A family of radical halogenases for the engineering of amino-acid-based products. Nat.Chem.Biol. (2019)

Release Date

2019-10-02

Peptides

BesD, lysine halogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BesD, lysine halogenase

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