SMTL ID : 6nkm.1 (1 other biounit)

Structure of PhqE D166N Reductase/Diels-Alderase from Penicillium fellutanum in complex with NADP+ and substrate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.21, G.22, T.23, S.24, G.25, I.26, G.45, S.46, N.47, K.50, C.75, D.76, L.77, S.78, T.106, A.107, A.108, M.110, R.131, T.157, S.158, G.159, P.200, G.201, A.202, V.203, T.205, A.207, V.208 Ligands: ZWP.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:P.200 Hydrogen bonds: A:T.23, A:T.23, A:T.23, A:S.24, A:S.24, A:S.24, A:S.24, A:S.24, A:I.26, A:S.46, A:N.47, A:D.76, A:D.76, A:L.77, A:S.78, A:T.106, A:A.108, A:R.131, A:V.203, A:V.203, A:T.205 Water bridges: A:G.27 Salt bridges: A:K.50, A:K.50 NAP.3: 29 residues within 4Å: Chain B: G.21, G.22, T.23, S.24, G.25, I.26, G.45, S.46, N.47, K.50, C.75, D.76, L.77, S.78, T.106, A.107, A.108, M.110, I.130, R.131, T.157, S.158, P.200, G.201, A.202, V.203, T.205, A.207, V.208 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:G.21, B:T.23, B:T.23, B:T.23, B:S.24, B:S.24, B:I.26, B:S.46, B:N.47, B:D.76, B:L.77, B:S.78, B:T.106, B:A.108, B:R.131, B:V.203, B:V.203 Water bridges: B:G.27 Salt bridges: B:K.50, B:K.50 NAP.4: 30 residues within 4Å: Chain C: G.21, G.22, T.23, S.24, G.25, I.26, G.45, S.46, N.47, K.50, C.75, D.76, L.77, S.78, T.106, A.107, A.108, M.110, I.130, T.157, S.158, G.159, H.161, P.200, G.201, A.202, V.203, T.205, A.207, V.208 20 PLIP interactions: 20 interactions with chain C Hydrogen bonds: C:G.21, C:T.23, C:T.23, C:S.24, C:S.24, C:S.24, C:S.24, C:I.26, C:S.46, C:N.47, C:D.76, C:L.77, C:S.78, C:T.106, C:A.108, C:R.131, C:V.203, C:V.203 Water bridges: C:G.27 Salt bridges: C:K.50 NAP.5: 30 residues within 4Å: Chain D: G.21, G.22, T.23, S.24, G.25, I.26, G.45, S.46, N.47, K.50, C.75, D.76, L.77, S.78, T.106, A.107, A.108, M.110, I.130, R.131, T.157, S.158, H.161, P.200, G.201, A.202, V.203, T.205, A.207, V.208 22 PLIP interactions: 22 interactions with chain D Hydrogen bonds: D:G.21, D:T.23, D:T.23, D:T.23, D:S.24, D:S.24, D:S.24, D:S.24, D:I.26, D:S.46, D:N.47, D:D.76, D:L.77, D:S.78, D:T.106, D:A.108, D:R.131, D:V.203, D:V.203, D:T.205 Water bridges: D:G.27 Salt bridges: D:K.50

1 x ZWP: 3-{[2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}-8H-pyrrolo[1,2-a]pyrazin-5-ium-1-olate(Non-covalent)

ZWP.2: 10 residues within 4Å: Chain A: A.160, H.161, N.166, W.169, G.201, A.202, L.204, V.208, A.223 Ligands: NAP.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.160, A:H.161, A:W.169, A:A.202, A:L.204, A:V.208, A:V.208, A:A.223 Hydrogen bonds: A:H.161 pi-Stacking: A:H.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dan, Q. et al., Fungal indole alkaloid biogenesis through evolution of a bifunctional reductase/Diels-Alderase. Nat.Chem. (2019)

Release Date

2019-10-09

Peptides

Short chain dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Short chain dehydrogenase

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