SMTL ID : 6nlp.1 (1 other biounit)

The crystal structure of an ABC transporter periplasmic binding protein YdcS from Escherichia coli BW25113

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 8 residues within 4Å: Chain A: W.21, Y.24, S.74, W.237, W.263, D.265, F.299, W.334 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.74 pi-Stacking: A:W.21, A:W.21, A:W.237, A:W.263, A:W.263

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: G.66, G.67, Y.68 No protein-ligand interaction detected (PLIP) EDO.3: 1 residues within 4Å: Chain A: G.186 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: G.160, I.212, H.213 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: Y.34, N.242, A.246, A.297, W.298 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of an ABC transporter periplasmic binding protein YdcS from Escherichia coli BW25113. To Be Published

Release Date

2019-01-23

Peptides

Bacterial extracellular solute-binding family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bacterial extracellular solute-binding family protein

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