- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 7 residues within 4Å:- Chain A: S.51, S.99, K.189, T.190, G.191, Y.192, R.231
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:S.51, A:S.99, A:S.99, A:T.190
- Water bridges: A:S.99, A:T.190, A:T.190, A:Y.192, A:Y.192, A:R.231, A:R.231
- Salt bridges: A:K.189, A:R.231
SO4.4: 4 residues within 4Å:- Chain A: E.8, K.9, P.10, S.11
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.11, A:S.11, A:S.11
- Salt bridges: A:K.9
SO4.5: 1 residues within 4Å:- Chain A: K.41
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.41, A:K.41
- Salt bridges: A:K.41
SO4.6: 3 residues within 4Å:- Chain A: Q.105, S.136, R.195
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.105, A:S.136, A:S.136
- Water bridges: A:N.133
- Salt bridges: A:R.195
SO4.7: 5 residues within 4Å:- Chain A: E.179, Y.184, K.236, K.240, I.245
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.184
- Water bridges: A:K.240, A:K.240
- Salt bridges: A:K.236, A:K.240
SO4.8: 2 residues within 4Å:- Chain A: S.131, G.132
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.132
SO4.9: 3 residues within 4Å:- Chain A: G.112, Q.113, A.114
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:A.114
- Water bridges: A:Q.113, A:Q.113, A:R.115
SO4.16: 4 residues within 4Å:- Chain B: N.29, K.32, N.212, W.214
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.29, B:N.212
- Salt bridges: B:K.32
SO4.17: 7 residues within 4Å:- Chain B: S.51, S.99, K.189, T.190, G.191, Y.192, R.231
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:S.51, B:S.99, B:T.190, B:T.190, B:Y.192
- Water bridges: B:S.99, B:R.231, B:R.231
- Salt bridges: B:K.189, B:R.231
SO4.18: 4 residues within 4Å:- Chain B: Q.105, S.136, R.195
- Ligands: PEG.27
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Q.105, B:S.136
- Water bridges: B:D.135, B:D.135, B:R.195
- Salt bridges: B:R.195
SO4.19: 5 residues within 4Å:- Chain A: Q.174, L.177, R.187
- Chain B: Q.174, R.187
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.174
- Water bridges: B:Q.174, A:Q.174
- Salt bridges: B:R.187, A:R.187
SO4.20: 2 residues within 4Å:- Chain A: H.71
- Chain B: H.159
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:H.159
SO4.21: 3 residues within 4Å:- Chain B: K.9, P.10, S.11
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.9, B:S.11, B:S.11
- Salt bridges: B:K.9
SO4.22: 3 residues within 4Å:- Chain B: G.112, Q.113, A.114
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.113, B:A.114
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x FMT: FORMIC ACID(Non-functional Binders)
FMT.11: 4 residues within 4Å:- Chain A: N.29, K.32, N.212, W.214
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.29, A:K.32, A:K.32, A:N.212
FMT.12: 2 residues within 4Å:- Chain A: F.36, E.242
No protein-ligand interaction detected (PLIP)FMT.13: 6 residues within 4Å:- Chain A: E.179, A.180, N.181
- Chain B: E.179, A.180, N.181
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:E.179, B:N.181, A:A.180, A:N.181
FMT.14: 4 residues within 4Å:- Chain A: D.211
- Chain B: R.88, D.89, H.90
No protein-ligand interaction detected (PLIP)FMT.25: 4 residues within 4Å:- Chain A: D.91, T.94
- Chain B: D.210, D.211
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.91, A:T.94
- Water bridges: A:D.91
FMT.26: 2 residues within 4Å:- Chain B: F.36, E.242
No protein-ligand interaction detected (PLIP)- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tan, K. et al., The crystal structure of class D carbapenem-hydrolyzing beta-lactamase BlaA from Shewanella oneidensis MR-1. To Be Published
- Release Date
- 2019-01-23
- Peptides
- Beta-lactamase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tan, K. et al., The crystal structure of class D carbapenem-hydrolyzing beta-lactamase BlaA from Shewanella oneidensis MR-1. To Be Published
- Release Date
- 2019-01-23
- Peptides
- Beta-lactamase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B