SMTL ID : 6ntz.1

Crystal structure of E. coli PBP5-meropenem

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x MXR: (2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid(Covalent)

MXR.1: 15 residues within 4Å: Chain A: A.72, S.73, K.76, G.114, S.115, S.116, S.139, N.141, G.181, L.182, K.242, T.243, G.244, H.245, R.277 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.182 Hydrogen bonds: A:S.73, A:S.116, A:S.116, A:S.116, A:S.139, A:N.141, A:T.243, A:H.245, A:R.277 Water bridges: A:K.242 Salt bridges: A:K.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caveney, N.A. et al., Structural insight into YcbB-mediated beta-lactam resistance in Escherichia coli. Nat Commun (2019)

Release Date

2019-03-20

Peptides

D-alanyl-D-alanine carboxypeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D-alanyl-D-alanine carboxypeptidase