SMTL ID : 6nz4.1

YcjX-GDP (type I)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain A: L.34, S.35, G.36, A.37, G.38, K.39, T.40, A.41, W.110, P.111, S.113, T.114, K.355, D.357, H.358, S.395, A.396, I.397, A.399 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.36, A:A.37, A:G.38, A:K.39, A:T.40, A:T.40, A:A.41, A:W.110, A:T.114, A:T.114, A:K.355, A:H.358, A:S.395, A:A.396, A:I.397 Water bridges: A:K.39, A:K.39, A:S.113, A:K.355, A:F.452 Salt bridges: A:K.39, A:D.357 pi-Stacking: A:W.110, A:W.110 GDP.2: 18 residues within 4Å: Chain B: L.34, S.35, G.36, A.37, G.38, K.39, T.40, A.41, W.110, S.113, T.114, K.355, D.357, H.358, S.395, A.396, I.397, A.399 24 PLIP interactions: 24 interactions with chain B Hydrogen bonds: B:G.36, B:A.37, B:G.38, B:K.39, B:T.40, B:T.40, B:A.41, B:W.110, B:T.114, B:T.114, B:T.114, B:K.355, B:H.358, B:S.395, B:A.396, B:I.397 Water bridges: B:K.39, B:P.111, B:K.355, B:K.355 Salt bridges: B:K.39, B:D.357 pi-Stacking: B:W.110, B:W.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsai, J.T. et al., Crystal Structure of the YcjX Stress Protein Reveals a Ras-Like GTP-Binding Protein. J.Mol.Biol. (2019)

Release Date

2019-09-18

Peptides

YcjX Stress Protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

YcjX Stress Protein

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