SMTL ID : 6o4n.1

Crystal Structure of Enolase from Chlamydia trachomatis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 10 residues within 4Å: Chain A: K.56, E.296, E.297, D.298, F.299, L.320, L.327, E.330, G.331, Q.334 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.327 Hydrogen bonds: A:E.330, A:Q.334 MRD.7: 7 residues within 4Å: Chain A: R.20, C.32, E.44, C.46, K.130, E.377, D.378 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.130, A:D.378 Water bridges: A:E.377, A:E.377 MRD.15: 8 residues within 4Å: Chain B: E.296, E.297, D.298, F.299, L.320, L.327, E.330, G.331 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.299, B:L.327 Hydrogen bonds: B:E.330, B:E.330 MRD.19: 7 residues within 4Å: Chain B: R.20, E.44, A.45, C.46, K.130, E.377, D.378 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:E.377 Hydrogen bonds: B:C.46 Water bridges: B:K.130

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.64, P.66, Q.70, G.71 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.71 EDO.3: 1 residues within 4Å: Chain A: Q.76 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: I.105, G.109, T.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.105 Water bridges: A:D.108 EDO.9: 4 residues within 4Å: Chain A: A.337, Q.363, G.364, Y.365 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.364 Water bridges: A:N.338, A:Y.365 EDO.10: 3 residues within 4Å: Chain A: Q.171, S.224, N.225 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.225, A:N.225 Water bridges: A:Q.171, A:Q.171, A:Q.171 EDO.13: 5 residues within 4Å: Chain A: N.221 Chain B: Q.207, L.208, A.209 Ligands: EDO.14 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.221 Water bridges: A:T.167, A:T.167, A:T.167, B:A.209 EDO.14: 6 residues within 4Å: Chain A: Q.207, L.208, A.209 Chain B: N.221 Ligands: CL.12, EDO.13 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.221 Water bridges: B:T.167, A:L.208 EDO.20: 1 residues within 4Å: Chain B: L.75 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 11 residues within 4Å: Chain A: G.50, A.51, S.52, H.165, Q.173, E.174, E.215, K.343, R.372, S.373 Ligands: MG.5 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:A.51, A:S.52, A:S.52, A:S.52, A:Q.173, A:E.174, A:S.373 Water bridges: A:S.52, A:S.52, A:K.343, A:Q.346, A:K.394 Salt bridges: A:H.165, A:K.343, A:R.372 PO4.16: 10 residues within 4Å: Chain B: G.50, A.51, S.52, H.165, Q.173, E.174, K.343, R.372, S.373 Ligands: MG.17 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:A.51, B:S.52, B:S.52, B:S.52, B:Q.173, B:S.373 Water bridges: B:K.343, B:K.343, B:K.343, B:Q.346, B:K.394 Salt bridges: B:H.165, B:K.343, B:R.372

5 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 5 residues within 4Å: Chain A: S.52, D.318, K.343 Ligands: PO4.4, MG.6 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.52, A:S.52, H2O.3, H2O.4, H2O.11 MG.6: 7 residues within 4Å: Chain A: Q.173, D.252, E.291, D.318, K.343, K.394 Ligands: MG.5 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.252, A:E.291, A:D.318, H2O.3, H2O.4, H2O.11 MG.11: 1 residues within 4Å: Chain A: T.53 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.53, A:T.53, H2O.14, H2O.15, H2O.15, H2O.15 MG.17: 5 residues within 4Å: Chain B: S.52, D.318, K.343 Ligands: PO4.16, MG.18 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:S.52, B:S.52, H2O.23, H2O.24, H2O.26 MG.18: 7 residues within 4Å: Chain B: Q.173, D.252, E.291, D.318, K.343, K.394 Ligands: MG.17 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.252, B:E.291, B:D.318, H2O.21, H2O.22, H2O.26

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 5 residues within 4Å: Chain A: L.208, A.209, P.220, N.221 Ligands: EDO.14 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of Enolase from Chlamydia trachomatis. to be published

Release Date

2019-03-13

Peptides

Enolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Enolase

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