- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: G.113, N.114, K.123, Y.124
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:N.114
- Water bridges: A:F.112, A:N.114, A:N.114, A:K.123, A:K.123, A:K.123, A:K.123
- Salt bridges: A:K.123
SO4.3: 3 residues within 4Å:- Chain A: P.423, G.424, S.425
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.424
- Water bridges: A:S.425
SO4.4: 6 residues within 4Å:- Chain A: H.353, T.359, R.362
- Chain B: T.359, R.362
- Ligands: SO4.13
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:T.359, B:T.359, B:T.359
- Water bridges: A:Q.363, B:Q.363
- Salt bridges: A:R.362, B:R.362
SO4.5: 1 residues within 4Å:- Chain A: K.478
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.478, A:Q.488
- Salt bridges: A:K.478
SO4.11: 4 residues within 4Å:- Chain B: G.113, N.114, K.123, Y.124
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:N.114
- Water bridges: B:F.112, B:N.114, B:N.114, B:K.123, B:K.123, B:K.123, B:K.123
- Salt bridges: B:K.123
SO4.12: 3 residues within 4Å:- Chain B: P.423, G.424, S.425
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.424
- Water bridges: B:S.425
SO4.13: 6 residues within 4Å:- Chain A: T.359, R.362
- Chain B: H.353, T.359, R.362
- Ligands: SO4.4
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:T.359, A:T.359, B:T.359
- Water bridges: A:Q.363, B:Q.363
- Salt bridges: A:R.362, B:R.362
SO4.14: 1 residues within 4Å:- Chain B: K.478
3 PLIP interactions:3 interactions with chain B- Water bridges: B:K.478, B:Q.488
- Salt bridges: B:K.478
- 8 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
2PE.6: 9 residues within 4Å:- Chain A: L.118, D.119, E.122, F.126, N.192, G.193, P.194, E.264, W.268
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.193
2PE.7: 7 residues within 4Å:- Chain A: I.48, R.50, E.402, T.403, V.409, G.410, K.411
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.50
2PE.8: 3 residues within 4Å:- Chain A: E.275, K.285, Y.286
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.242
2PE.9: 8 residues within 4Å:- Chain A: L.177, L.178, G.179, Q.485, V.486, Y.487, Q.488, I.489
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.488
2PE.15: 9 residues within 4Å:- Chain B: L.118, D.119, E.122, F.126, N.192, G.193, P.194, E.264, W.268
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.193
- Water bridges: B:D.119
2PE.16: 7 residues within 4Å:- Chain B: I.48, R.50, E.402, T.403, V.409, G.410, K.411
1 PLIP interactions:1 interactions with chain B- Water bridges: B:R.50
2PE.17: 3 residues within 4Å:- Chain B: E.275, K.285, Y.286
1 PLIP interactions:1 interactions with chain B- Water bridges: B:Q.242
2PE.18: 8 residues within 4Å:- Chain B: L.177, L.178, G.179, Q.485, V.486, Y.487, Q.488, I.489
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.488
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shek, R. et al., Structural Determinants for Substrate Selectivity in Guanine Deaminase Enzymes of the Amidohydrolase Superfamily. Biochemistry (2019)
- Release Date
- 2019-07-24
- Peptides
- Yeast Guanine Deaminase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 8 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shek, R. et al., Structural Determinants for Substrate Selectivity in Guanine Deaminase Enzymes of the Amidohydrolase Superfamily. Biochemistry (2019)
- Release Date
- 2019-07-24
- Peptides
- Yeast Guanine Deaminase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A