SMTL ID : 6okv.1

PilT4 from Geobacter metallireducens bound to AMP-PNP: C2ccocco conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.01 Å

Oligo State

homo-hexamer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.158, E.184 Ligands: ANP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.158 MG.3: 3 residues within 4Å: Chain B: S.158, E.184 Ligands: ANP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.158 MG.6: 3 residues within 4Å: Chain D: S.158, E.184 Ligands: ANP.7 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:S.158 MG.8: 3 residues within 4Å: Chain E: S.158, E.184 Ligands: ANP.9 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:S.158

4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 15 residues within 4Å: Chain A: L.130, P.152, T.153, G.154, S.155, G.156, K.157, S.158, T.159, E.184, H.250, L.289, R.298, L.300 Ligands: MG.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.103, A:L.130, A:G.154, A:S.155, A:G.156, A:G.156, A:K.157, A:K.157, A:S.158, A:S.158, A:T.159 ANP.4: 16 residues within 4Å: Chain B: R.118, L.130, P.152, T.153, G.154, S.155, G.156, K.157, S.158, T.159, E.184, H.250, L.289, R.298, L.300 Ligands: MG.3 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:R.118, B:R.118, B:L.130, B:G.154, B:S.155, B:G.156, B:G.156, B:K.157, B:K.157, B:S.158, B:S.158, B:T.159 ANP.7: 16 residues within 4Å: Chain D: R.103, L.130, P.152, T.153, G.154, S.155, G.156, K.157, S.158, T.159, E.184, H.250, L.289, R.298, L.300 Ligands: MG.6 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:R.103, D:L.130, D:G.154, D:S.155, D:G.156, D:G.156, D:K.157, D:K.157, D:S.158, D:S.158, D:T.159, D:T.159 ANP.9: 15 residues within 4Å: Chain E: L.130, P.152, T.153, G.154, S.155, G.156, K.157, S.158, T.159, E.184, H.250, L.289, R.298, L.300 Ligands: MG.8 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:L.130, E:G.154, E:S.155, E:G.156, E:G.156, E:K.157, E:K.157, E:S.158, E:S.158, E:T.159, E:T.159

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 13 residues within 4Å: Chain C: L.130, T.153, G.154, S.155, G.156, K.157, S.158, T.159, E.184, Y.185, L.289, R.298, L.300 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:L.130, C:G.154, C:S.155, C:G.156, C:K.157, C:S.158, C:S.158, C:T.159, C:T.159, C:Y.185, C:Y.185 Salt bridges: C:K.157 ADP.10: 14 residues within 4Å: Chain F: R.103, L.130, T.153, G.154, S.155, G.156, K.157, S.158, T.159, E.184, Y.185, L.289, R.298, L.300 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:L.130, F:G.154, F:S.155, F:G.156, F:G.156, F:K.157, F:S.158, F:T.159, F:T.159, F:Y.185 Salt bridges: F:R.103, F:R.103, F:K.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCallum, M. et al., Multiple conformations facilitate PilT function in the type IV pilus. Nat Commun (2019)

Release Date

2019-11-20

Peptides

Twitching motility pilus retraction ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Twitching motility pilus retraction ATPase

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