SMTL ID : 6oos.2 (1 other biounit)

HIV-1 Protease NL4-3 L90M Mutant in complex with darunavir

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: L.19, K.20, E.21, E.34, N.83 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.21, A:N.83 Water bridges: A:K.20, A:E.34 Salt bridges: A:K.20 SO4.3: 4 residues within 4Å: Chain A: R.87 Chain B: K.7, R.8, L.10 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Water bridges: A:R.87, B:R.8, B:R.8 Hydrogen bonds: B:R.8 Salt bridges: B:R.8 SO4.4: 6 residues within 4Å: Chain B: D.30, K.45, Q.58, T.74, L.76 Ligands: SO4.6 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.45 SO4.5: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.37 Water bridges: B:Q.18 SO4.6: 3 residues within 4Å: Chain B: Q.58, D.60 Ligands: SO4.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.58, B:D.60 SO4.7: 3 residues within 4Å: Chain B: G.68, H.69, K.70 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.68, B:K.70

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.2: 30 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 22 PLIP interactions: 10 interactions with chain B, 12 interactions with chain A Hydrophobic interactions: B:L.23, B:I.47, A:A.28, A:V.32, A:P.81, A:V.82, A:I.84 Hydrogen bonds: B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30, A:D.29, A:D.30, A:D.30 Water bridges: B:I.50, A:R.8, A:D.30, A:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Henes, M. et al., Molecular Determinants of Epistasis in HIV-1 Protease: Elucidating the Interdependence of L89V and L90M Mutations in Resistance. Biochemistry (2019)

Release Date

2019-08-21

Peptides

NL4-3 PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

NL4-3 PROTEASE

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