SMTL ID : 6os3.2 (1 other biounit)

Crystal structure of native CymD prenyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.1: 13 residues within 4Å: Chain A: D.57, V.58, E.66, A.81, M.134, W.150, F.194, L.195, Y.211, V.257, Y.276, Y.328, Y.343 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.276, A:Y.328, A:Y.343 Hydrogen bonds: A:V.58, A:W.150, A:Y.211 Water bridges: A:D.57, A:D.57, A:D.57, A:D.57, A:D.57, A:E.66, A:E.66, A:A.81, A:R.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roose, B.W. et al., Structural Basis of Tryptophan Reverse N-Prenylation Catalyzed by CymD. Biochemistry (2019)

Release Date

2019-07-17

Peptides

CymD prenyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CymD prenyltransferase

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