- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.61 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 5 residues within 4Å:- Chain A: D.203, K.210, D.280, E.282
- Ligands: ZN.1
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.203, A:D.280, A:D.280, A:E.282, H2O.3
MN.8: 5 residues within 4Å:- Chain B: D.203, K.210, D.280, E.282
- Ligands: ZN.7
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.203, B:D.280, B:D.280, B:E.282, H2O.9
MN.14: 4 residues within 4Å:- Chain C: D.203, D.280, E.282
- Ligands: ZN.13
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.203, C:D.280, C:D.280, C:E.282, H2O.13
MN.19: 5 residues within 4Å:- Chain D: D.203, K.210, D.280, E.282
- Ligands: ZN.18
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.203, D:D.280, D:D.280, D:E.282, H2O.17
MN.24: 5 residues within 4Å:- Chain E: D.203, K.210, D.280, E.282
- Ligands: ZN.23
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.203, E:D.280, E:D.280, E:E.282, H2O.21
MN.29: 5 residues within 4Å:- Chain F: D.203, K.210, D.280, E.282
- Ligands: ZN.28
5 PLIP interactions:4 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:D.203, F:D.280, F:D.280, F:E.282, H2O.24
- 21 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 5 residues within 4Å:- Chain A: W.21, G.22, E.23, K.24, A.25
Ligand excluded by PLIPCL.4: 3 residues within 4Å:- Chain A: S.413, A.414
- Chain E: N.361
Ligand excluded by PLIPCL.5: 5 residues within 4Å:- Chain A: A.281, E.282, G.283, R.284, L.308
Ligand excluded by PLIPCL.6: 3 residues within 4Å:- Chain A: W.78, A.83, R.88
Ligand excluded by PLIPCL.9: 3 residues within 4Å:- Chain B: G.22, E.23, K.24
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain B: A.281, G.283, R.284, L.308
Ligand excluded by PLIPCL.11: 2 residues within 4Å:- Chain B: S.413, A.414
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain B: W.78, A.83, R.88
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain C: A.281, G.283, R.284, L.308
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain C: S.413, A.414
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain C: W.78, A.83, R.88
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain D: A.281, G.283, R.284, L.308
Ligand excluded by PLIPCL.21: 2 residues within 4Å:- Chain D: S.413, A.414
Ligand excluded by PLIPCL.22: 2 residues within 4Å:- Chain D: L.44, R.73
Ligand excluded by PLIPCL.25: 5 residues within 4Å:- Chain E: A.281, E.282, G.283, R.284, L.308
Ligand excluded by PLIPCL.26: 3 residues within 4Å:- Chain E: P.84, S.413, A.414
Ligand excluded by PLIPCL.27: 3 residues within 4Å:- Chain E: W.78, A.83, R.88
Ligand excluded by PLIPCL.30: 4 residues within 4Å:- Chain F: A.281, G.283, R.284, L.308
Ligand excluded by PLIPCL.31: 3 residues within 4Å:- Chain F: P.84, S.413, A.414
Ligand excluded by PLIPCL.32: 3 residues within 4Å:- Chain F: W.78, A.83, R.88
Ligand excluded by PLIPCL.33: 3 residues within 4Å:- Chain F: G.239, L.240, N.241
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minasov, G. et al., Comparison of metal-bound and unbound structures of aminopeptidase B proteins from Escherichia coli and Yersinia pestis. Protein Sci. (2020)
- Release Date
- 2019-05-15
- Peptides
- Peptidase B: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.61 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 21 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minasov, G. et al., Comparison of metal-bound and unbound structures of aminopeptidase B proteins from Escherichia coli and Yersinia pestis. Protein Sci. (2020)
- Release Date
- 2019-05-15
- Peptides
- Peptidase B: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F