SMTL ID : 6ozg.2 (1 other biounit)

Crystal structure of Thermotoga maritima (Tm) Endonuclease V (E89Q) in complex with a 12mer DNA containing an inosine followed by a ribo-adenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.43, D.110, H.214 Chain B: G.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.43, A:H.214

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: E.72, K.95, E.98, K.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.95 GOL.4: 6 residues within 4Å: Chain A: S.140 Chain B: T.3, A.5, A.6, G.7, A.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.140

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: R.204, R.205, I.206, R.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.205, A:I.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, J. et al., Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase. Mol.Cell (2019)

Release Date

2019-09-04

Peptides

Endonuclease V: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Endonuclease V

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