SMTL ID : 6ozh.1 (1 other biounit)

Crystal structure of Ciona intestinalis (Ci) Endonuclease V in complex with a 24mer DNA containing an inosine followed by a ribo-adenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.43, V.44, D.234 Chain C: T.12 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.43, A:D.234 CA.2: 6 residues within 4Å: Chain B: D.43, V.44, D.234, R.238 Chain D: T.12, A.13 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.43, B:D.234 CA.3: 6 residues within 4Å: Chain A: D.43, V.44, E.91, D.117 Chain C: A.11, T.12 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.43 CA.4: 5 residues within 4Å: Chain B: D.43, E.91, D.117 Chain D: A.11, T.12 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, J. et al., Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase. Mol.Cell (2019)

Release Date

2019-09-04

Peptides

endonuclease V isoform X2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

endonuclease V isoform X2

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