SMTL ID : 6ozu.1 (2 other biounits)

Crystal structure of the MIF4G domain of Trypanosoma cruzi translation initiation factor EIF4G5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.27, S.72, N.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.75 Salt bridges: A:K.27 SO4.2: 4 residues within 4Å: Chain A: R.169, Q.214, R.215, R.216 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.214, A:R.215, A:R.216 Water bridges: A:Q.214, A:R.216 Salt bridges: A:R.169, A:R.215, A:R.216 SO4.3: 4 residues within 4Å: Chain A: R.168, R.169, F.170, R.216 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.169, A:F.170, A:F.170 Salt bridges: A:R.168, A:R.216 SO4.4: 5 residues within 4Å: Chain A: L.33, P.34, I.35, R.36, Q.37 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.35, A:R.36, A:Q.37, A:Q.37 Water bridges: A:R.36 Salt bridges: A:R.36 SO4.5: 4 residues within 4Å: Chain A: E.110, G.163, T.164, R.168 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.164 Water bridges: A:W.159, A:L.160, A:R.168 Salt bridges: A:R.168 SO4.6: 2 residues within 4Å: Chain A: R.125, R.168 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.125, A:R.168 SO4.7: 4 residues within 4Å: Chain A: P.57, E.58, S.60, K.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.60 Salt bridges: A:K.133

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: R.85, F.86, N.89, R.93 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.93 GOL.9: 6 residues within 4Å: Chain A: I.136, N.137, H.178, N.181, L.182, T.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.185, A:T.185 GOL.10: 2 residues within 4Å: Chain A: H.237, H.239 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.237, A:H.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santos, L.P.C. et al., Crystal structure of the MIF4G domain of the Trypanosoma cruzi translation initiation factor EIF4G5. Acta Crystallogr.,Sect.F (2019)

Release Date

2019-12-11

Peptides

Eukaryotic translation initiation factor 4 gamma 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic translation initiation factor 4 gamma 5

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