SMTL ID : 6p0x.1 (1 other biounit)

Structure of the N-terminal domain of effector protein SpvB from Salmonella typhimurium strain LT2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

3 x AKR: ACRYLIC ACID(Non-covalent)

AKR.1: 4 residues within 4Å: Chain A: Q.168, M.208, L.273, Y.276 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.273, A:Y.276 Hydrogen bonds: A:Q.168 AKR.2: 6 residues within 4Å: Chain A: C.51, A.52, T.53, L.170, M.208, R.209 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.170 Hydrogen bonds: A:T.53 Water bridges: A:L.211 AKR.3: 1 residues within 4Å: Chain A: E.312 No protein-ligand interaction detected (PLIP)

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: A.31, L.32, A.33, H.35, S.50, C.51, A.52 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.31, A:A.33, A:S.50, A:A.52 GOL.5: 6 residues within 4Å: Chain A: L.187, N.190, D.192, E.247, S.263, W.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.190, A:D.192, A:W.264 GOL.6: 5 residues within 4Å: Chain A: Y.67, D.159, H.165, G.277, F.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.159 GOL.7: 5 residues within 4Å: Chain A: F.121, Y.122, H.140, D.141, S.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.123 GOL.8: 3 residues within 4Å: Chain A: A.98, Y.99, G.100 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Structure of the N-terminal domain of effector protein SpvB from Salmonella typhimurium strain LT2. To Be Published

Release Date

2019-06-19

Peptides

Salmonella plasmid virulence: SpvB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Salmonella plasmid virulence: SpvB

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