SMTL ID : 6p12.1

Structure of spastin AAA domain (wild-type) in complex with diaminotriazole-based inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x NKY: 3-{[5-amino-1-(2-fluoro-6-methoxybenzene-1-carbonyl)-1H-1,2,4-triazol-3-yl]amino}-N-methylbenzamide(Non-covalent)

NKY.1: 19 residues within 4Å: Chain A: D.40, I.41, A.42, G.43, Q.44, G.82, N.83, G.84, L.87, S.204, L.205, P.206, T.210, L.214, R.217, L.218, G.243, S.244, T.247 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.44, A:N.83, A:P.206, A:T.210, A:L.214 Hydrogen bonds: A:D.40, A:A.42, A:A.42, A:Q.44, A:S.204, A:T.210 Water bridges: A:D.45, A:D.207

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.82, N.83, G.84, K.85, T.86 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.82, A:N.83, A:G.84, A:K.85, A:T.86 Water bridges: A:L.87 Salt bridges: A:K.85

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 3 residues within 4Å: Chain A: E.28, S.107, Y.112 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.112 Hydrogen bonds: A:E.28, A:E.28, A:S.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pisa, R. et al., Analyzing Resistance to Design Selective Chemical Inhibitors for AAA Proteins. Cell Chem Biol (2019)

Release Date

2019-07-24

Peptides

Drosophila melanogaster Spastin AAA domain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Drosophila melanogaster Spastin AAA domain