SMTL ID : 6p1j.2 (1 other biounit)

The structure of condensation and adenylation domains of teixobactin-producing nonribosomal peptide synthetase Txo2 serine module

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

monomer

Ligands

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: D.307, A.799, H.800 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.799 FMT.2: 3 residues within 4Å: Chain A: G.444, A.446, E.447 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.445, A:A.446, A:E.447 Water bridges: A:R.450 FMT.3: 2 residues within 4Å: Chain A: P.278, T.297 No protein-ligand interaction detected (PLIP) FMT.4: 5 residues within 4Å: Chain A: S.621, G.622, S.623, T.624, K.628 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.620, A:S.621, A:G.622, A:S.623, A:T.624, A:K.628, A:K.628

1 x FLC: CITRATE ANION(Non-covalent)

FLC.5: 5 residues within 4Å: Chain A: R.626, R.826, P.827, E.828, L.829 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.826, A:E.828, A:L.829 Salt bridges: A:R.626, A:R.826

13 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: A.24, H.30, P.106, F.107, H.134 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain A: W.199, T.297, L.298, A.299, F.332, V.335 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: Y.550, T.620 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: R.518, L.824 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: G.144, R.148 Ligand excluded by PLIP CL.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain A: H.57, A.59, Q.175, Y.176, I.291 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain A: I.879, L.881 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain A: P.278 Ligand excluded by PLIP CL.16: 1 residues within 4Å: Chain A: L.443 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain A: Q.201 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain A: S.326, H.327 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., Structures of teixobactin-producing nonribosomal peptide synthetase condensation and adenylation domains. Curr Res Struct Biol (2020)

Release Date

2019-05-29

Peptides

Txo2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Txo2

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