SMTL ID : 6p80.1

Structure of E. coli MS115-1 CdnC + ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: S.58, G.59, S.60, K.63, D.74, L.146, E.150, L.155, T.157, I.159, H.162, K.185, K.201, S.202, F.203, D.264, N.270, N.271, V.272, R.274 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:S.58, A:S.60, A:K.63, A:K.201, A:S.202, A:S.202, A:F.203, A:N.270 Water bridges: A:S.58, A:S.60, A:S.60, A:S.60, A:E.150, A:K.185, A:K.185, A:K.185, A:N.270, A:V.272, A:R.274 Salt bridges: A:K.63, A:K.63, A:K.185, A:K.185, A:K.201

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: G.59, S.60, D.74 Ligands: ATP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.74, H2O.2, H2O.2, H2O.5

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain A: G.59, S.60, L.61, L.70, D.72, I.73, D.74 Ligand excluded by PLIP

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 2 residues within 4Å: Chain A: M.289, D.293 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, Q. et al., HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity. Mol.Cell (2020)

Release Date

2019-12-25

Peptides

E. coli MS115-1 NucC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E. coli MS115-1 NucC

Related Entries With Identical Sequence