SMTL ID : 6p8j.1 (3 other biounits)

Structure of P. aeruginosa ATCC27853 CdnD D62N/D64N mutant bound to ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 24 residues within 4Å: Chain A: G.51, S.52, R.55, K.58, N.64, N.66, R.108, D.132, I.154, K.155, T.156, D.157, P.158, H.161, K.184, P.200, S.201, F.202, D.241, L.245, G.246, P.247, I.249 Ligands: MG.3 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.52, A:S.52, A:R.55, A:R.55, A:N.66, A:R.108, A:R.108, A:T.156, A:S.201, A:S.201, A:G.246, A:P.247 Water bridges: A:Y.53, A:N.66, A:D.132, A:D.157, A:S.201, A:S.201, A:S.201 Salt bridges: A:K.58, A:K.58, A:K.184

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: L.195, K.196, K.199, R.257 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: K.58, N.64, N.66, D.132 Ligands: ATP.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.64, A:D.132, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, Q. et al., HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity. Mol.Cell (2020)

Release Date

2019-12-25

Peptides

Nucleotidyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Nucleotidyltransferase

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