SMTL ID : 6p8v.1

Structure of E. coli MS115-1 HORMA:CdnC:Trip13 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

hetero-6-1-1-mer

Ligands

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: R.28, L.29, V.30, L.32, D.82, V.83, G.84, S.85, G.86, K.87, T.88, E.89, Q.159, N.204, L.234, F.268, S.269, T.272, Q.273 Chain B: R.215, R.216 20 PLIP interactions: 16 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:V.30, A:V.30, A:D.82, A:G.84, A:S.85, A:G.86, A:K.87, A:T.88, A:T.88, A:E.89, A:Q.159, A:N.204, A:N.204, A:T.272 Salt bridges: A:K.87, A:K.87, B:R.215, B:R.215, B:R.215, B:R.216 ATP.2: 19 residues within 4Å: Chain B: R.28, L.29, V.30, L.32, D.82, V.83, G.84, S.85, G.86, K.87, T.88, E.89, N.204, F.268, S.269, T.272, Q.273 Chain C: R.215, R.216 19 PLIP interactions: 15 interactions with chain B, 4 interactions with chain C Hydrogen bonds: B:V.30, B:D.82, B:G.84, B:S.85, B:S.85, B:G.86, B:K.87, B:T.88, B:T.88, B:E.89, B:N.204, B:N.204, B:Q.273 Salt bridges: B:K.87, B:K.87, C:R.215, C:R.215, C:R.215, C:R.216 ATP.3: 19 residues within 4Å: Chain C: R.28, L.29, V.30, V.83, G.84, S.85, G.86, K.87, T.88, E.89, D.158, L.234, F.268, S.269, T.272, Q.273 Chain D: D.188, R.215, R.216 16 PLIP interactions: 12 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:V.30, C:G.84, C:S.85, C:S.85, C:G.86, C:K.87, C:T.88, C:T.88, C:E.89, C:E.89 Salt bridges: C:K.87, C:K.87, D:R.215, D:R.215, D:R.215, D:R.216 ATP.4: 22 residues within 4Å: Chain D: R.28, L.29, V.30, L.32, D.82, V.83, G.84, S.85, G.86, K.87, T.88, E.89, D.158, L.234, F.268, S.269, T.272, Q.273 Chain E: R.72, D.188, R.215, R.216 17 PLIP interactions: 13 interactions with chain D, 4 interactions with chain E Hydrogen bonds: D:V.30, D:V.30, D:G.84, D:S.85, D:G.86, D:K.87, D:T.88, D:T.88, D:E.89, D:E.89, D:Q.273, E:R.215 Salt bridges: D:K.87, D:K.87, E:R.215, E:R.215, E:R.216 ATP.5: 16 residues within 4Å: Chain G: S.58, G.59, S.60, K.63, L.70, D.74, L.155, H.162, K.185, K.201, S.202, F.203, D.264, N.270, V.272 Ligands: MG.6 12 PLIP interactions: 12 interactions with chain G Hydrogen bonds: G:S.60, G:K.63, G:K.63, G:K.201, G:K.201, G:S.202, G:F.203, G:N.270 Salt bridges: G:K.63, G:K.63, G:K.185, G:K.185

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 2 residues within 4Å: Chain G: D.74 Ligands: ATP.5 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:D.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, Q. et al., HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity. Mol.Cell (2020)

Release Date

2019-12-25

Peptides

ATPase, AAA family: ABCDEF
E. coli MS115-1 CdnC: G
E. coli MS115-1 HORMA: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

ATPase, AAA family

E. coli MS115-1 CdnC

E. coli MS115-1 HORMA

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