SMTL ID : 6pb3.1

Structure of Rhizobiales Trip13

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: D.82, V.83, G.84, S.85, G.86, K.87, T.88 Chain F: R.215 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:G.84, A:S.85, A:G.86, A:K.87, A:T.88 Water bridges: A:T.88, A:E.89, F:R.215 Salt bridges: A:K.87 SO4.2: 8 residues within 4Å: Chain B: D.82, V.83, G.84, S.85, G.86, K.87, T.88 Chain D: R.215 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:G.84, B:S.85, B:G.86, B:K.87, B:T.88 Water bridges: B:T.88, B:E.89, D:R.215 Salt bridges: B:K.87 SO4.3: 8 residues within 4Å: Chain C: D.82, V.83, G.84, S.85, G.86, K.87, T.88 Chain E: R.215 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:G.84, C:S.85, C:G.86, C:K.87, C:T.88 Water bridges: C:T.88, C:E.89, E:R.215 Salt bridges: C:K.87 SO4.4: 8 residues within 4Å: Chain C: R.215 Chain D: D.82, V.83, G.84, S.85, G.86, K.87, T.88 9 PLIP interactions: 8 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:G.84, D:S.85, D:G.86, D:K.87, D:T.88 Water bridges: D:T.88, D:E.89, C:R.215 Salt bridges: D:K.87 SO4.5: 8 residues within 4Å: Chain A: R.215 Chain E: D.82, V.83, G.84, S.85, G.86, K.87, T.88 9 PLIP interactions: 8 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:G.84, E:S.85, E:G.86, E:K.87, E:T.88 Water bridges: E:T.88, E:E.89, A:R.215 Salt bridges: E:K.87 SO4.6: 8 residues within 4Å: Chain B: R.215 Chain F: D.82, V.83, G.84, S.85, G.86, K.87, T.88 9 PLIP interactions: 1 interactions with chain B, 8 interactions with chain F Water bridges: B:R.215, F:T.88, F:E.89 Hydrogen bonds: F:G.84, F:S.85, F:G.86, F:K.87, F:T.88 Salt bridges: F:K.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, Q. et al., HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity. Mol.Cell (2020)

Release Date

2019-12-25

Peptides

Rhizobiales Sp. Pch2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Rhizobiales Sp. Pch2