SMTL ID : 6pbu.1

ClpP1 from Mycobacterium smegmatis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-14-mer

Ligands

18 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 7 residues within 4Å: Chain B: M.78, V.79, A.81, C.83, I.85, A.103, T.105 Ligand excluded by PLIP MLI.2: 6 residues within 4Å: Chain C: M.78, V.79, C.83, I.85, A.103, T.105 Ligand excluded by PLIP MLI.3: 6 residues within 4Å: Chain C: S.67, I.68, S.69, L.123, G.124, T.127 Ligand excluded by PLIP MLI.4: 3 residues within 4Å: Chain C: E.138 Chain D: W.171, E.176 Ligand excluded by PLIP MLI.5: 6 residues within 4Å: Chain E: D.56, K.108, Y.110, G.196, P.197, G.198 Ligand excluded by PLIP MLI.6: 3 residues within 4Å: Chain E: E.138 Chain F: W.171, E.176 Ligand excluded by PLIP MLI.7: 4 residues within 4Å: Chain F: E.138, V.142 Chain G: W.171, E.176 Ligand excluded by PLIP MLI.8: 9 residues within 4Å: Chain G: P.122, L.123, G.124, G.125, V.126, T.127, F.140 Chain H: D.132, I.133 Ligand excluded by PLIP MLI.9: 5 residues within 4Å: Chain G: M.78, V.79, I.85, A.103, T.105 Ligand excluded by PLIP MLI.10: 7 residues within 4Å: Chain I: M.78, V.79, A.81, C.83, I.85, A.103, T.105 Ligand excluded by PLIP MLI.11: 6 residues within 4Å: Chain J: M.78, V.79, C.83, I.85, A.103, T.105 Ligand excluded by PLIP MLI.12: 6 residues within 4Å: Chain J: S.67, I.68, S.69, L.123, G.124, T.127 Ligand excluded by PLIP MLI.13: 3 residues within 4Å: Chain J: E.138 Chain K: W.171, E.176 Ligand excluded by PLIP MLI.14: 6 residues within 4Å: Chain L: D.56, K.108, Y.110, G.196, P.197, G.198 Ligand excluded by PLIP MLI.15: 3 residues within 4Å: Chain L: E.138 Chain M: W.171, E.176 Ligand excluded by PLIP MLI.16: 4 residues within 4Å: Chain M: E.138, V.142 Chain N: W.171, E.176 Ligand excluded by PLIP MLI.17: 9 residues within 4Å: Chain A: D.132, I.133 Chain N: P.122, L.123, G.124, G.125, V.126, T.127, F.140 Ligand excluded by PLIP MLI.18: 5 residues within 4Å: Chain N: M.78, V.79, I.85, A.103, T.105 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagpal, J. et al., Molecular and structural insights into an asymmetric proteolytic complex (ClpP1P2) from Mycobacterium smegmatis. Sci Rep (2019)

Release Date

2019-12-18

Peptides

ATP-dependent Clp protease proteolytic subunit: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
A

I
B

J
C

K
D

L
E

M
F

N
G

ATP-dependent Clp protease proteolytic subunit