- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 9 residues within 4Å:- Chain A: S.23, T.94, S.95, E.126, G.149, G.150, G.151, S.152
- Ligands: MG.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.23, A:S.23, A:S.23, A:S.23, A:T.94, A:S.95, A:G.150, A:G.151, A:S.152
PO4.3: 11 residues within 4Å:- Chain A: N.24, S.25, R.27, K.46, I.148, G.149, G.150, G.212, G.213, T.214, R.267
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:S.25, A:S.25, A:G.213, A:T.214
- Salt bridges: A:R.27, A:K.46, A:K.48, A:R.267
PO4.9: 9 residues within 4Å:- Chain B: S.23, T.94, S.95, E.126, G.149, G.150, G.151, S.152
- Ligands: MG.8
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:S.23, B:S.23, B:S.23, B:S.23, B:T.94, B:S.95, B:G.150, B:G.151, B:S.152
- Water bridges: B:R.27, B:E.126, B:E.154
PO4.10: 10 residues within 4Å:- Chain B: N.24, S.25, R.27, I.148, G.149, G.150, G.212, G.213, T.214, R.267
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:N.24, B:S.25, B:S.25, B:G.213, B:T.214
- Salt bridges: B:R.27, B:K.48, B:R.267
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
GNP.5: 14 residues within 4Å:- Chain A: V.379, Y.380, L.381, A.382, H.383
- Chain B: E.44, K.46, R.216, K.220, L.233, H.234, G.294, R.298
- Ligands: MG.4
11 PLIP interactions:5 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:K.46, B:K.220, B:G.294, B:G.294, A:Y.380, A:L.381, A:A.382, A:H.383
- Salt bridges: B:E.44
- pi-Stacking: A:Y.380, A:Y.380
GNP.7: 13 residues within 4Å:- Chain A: E.44, R.216, K.220, L.233, H.234, G.294, R.298
- Chain B: V.379, Y.380, L.381, A.382, H.383
- Ligands: MG.6
11 PLIP interactions:5 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:K.220, A:G.294, A:G.294, B:L.381, B:A.382, B:H.383, B:H.383
- Water bridges: A:R.267
- Salt bridges: A:E.44
- pi-Stacking: B:Y.380, B:Y.380
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Song, H. et al., Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori. Febs J. (2020)
- Release Date
- 2019-11-20
- Peptides
- Guanosine pentaphosphate phosphohydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Song, H. et al., Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori. Febs J. (2020)
- Release Date
- 2019-11-20
- Peptides
- Guanosine pentaphosphate phosphohydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B