- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.39 Å
- Oligo State
- homo-trimer
- Ligands
- 33 x SO4: SULFATE ION(Non-functional Binders)
- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.12: 6 residues within 4Å:- Chain A: H.43, Q.45, T.330, W.366, V.393, T.394
No protein-ligand interaction detected (PLIP)GOL.13: 7 residues within 4Å:- Chain A: A.381, D.382, K.383, E.384, E.495, R.498, N.499
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.382, A:D.382, A:K.383, A:E.384, A:E.495
GOL.14: 6 residues within 4Å:- Chain A: A.73, D.103, L.104, D.109, F.110, Y.113
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.71, A:S.71, A:D.103, A:D.109, A:F.110, A:F.110
GOL.30: 6 residues within 4Å:- Chain B: H.43, Q.45, T.330, W.366, V.393, T.394
No protein-ligand interaction detected (PLIP)GOL.31: 7 residues within 4Å:- Chain B: A.381, D.382, K.383, E.384, E.495, R.498, N.499
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.382, B:D.382, B:K.383, B:E.384, B:E.495
GOL.32: 6 residues within 4Å:- Chain B: A.73, D.103, L.104, D.109, F.110, Y.113
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.71, B:S.71, B:D.103, B:D.109, B:F.110, B:F.110
GOL.48: 6 residues within 4Å:- Chain C: H.43, Q.45, T.330, W.366, V.393, T.394
No protein-ligand interaction detected (PLIP)GOL.49: 7 residues within 4Å:- Chain C: A.381, D.382, K.383, E.384, E.495, R.498, N.499
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:D.382, C:D.382, C:K.383, C:E.384, C:E.495
GOL.50: 6 residues within 4Å:- Chain C: A.73, D.103, L.104, D.109, F.110, Y.113
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:S.71, C:S.71, C:D.103, C:D.109, C:F.110, C:F.110
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.15: 1 residues within 4Å:- Chain A: N.38
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.37
NAG.16: 4 residues within 4Å:- Chain A: N.180, N.251
- Chain C: S.232
- Ligands: SO4.11
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.180, A:N.251
NAG.17: 6 residues within 4Å:- Chain A: E.492, E.495, S.496, N.499, T.501
- Ligands: SO4.10
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.492, A:T.501
NAG.18: 1 residues within 4Å:- Chain A: N.169
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.169
NAG.33: 1 residues within 4Å:- Chain B: N.38
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.37
NAG.34: 4 residues within 4Å:- Chain A: S.232
- Chain B: N.180, N.251
- Ligands: SO4.29
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.180, B:N.251
NAG.35: 6 residues within 4Å:- Chain B: E.492, E.495, S.496, N.499, T.501
- Ligands: SO4.28
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.492, B:T.501
NAG.36: 1 residues within 4Å:- Chain B: N.169
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.169
NAG.51: 1 residues within 4Å:- Chain C: N.38
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.37
NAG.52: 4 residues within 4Å:- Chain B: S.232
- Chain C: N.180, N.251
- Ligands: SO4.47
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.180, C:N.251
NAG.53: 6 residues within 4Å:- Chain C: E.492, E.495, S.496, N.499, T.501
- Ligands: SO4.46
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.492, C:T.501
NAG.54: 1 residues within 4Å:- Chain C: N.169
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.169
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antanasijevic, A. et al., Identification of a pH sensor in Influenza hemagglutinin using X-ray crystallography. J.Struct.Biol. (2020)
- Release Date
- 2019-11-13
- Peptides
- Hemagglutinin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.39 Å
- Oligo State
- homo-trimer
- Ligands
- 33 x SO4: SULFATE ION(Non-functional Binders)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antanasijevic, A. et al., Identification of a pH sensor in Influenza hemagglutinin using X-ray crystallography. J.Struct.Biol. (2020)
- Release Date
- 2019-11-13
- Peptides
- Hemagglutinin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A