SMTL ID : 6pe2.1

Drosophila P element transposase strand transfer complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Covalent)

GTP.1: 15 residues within 4Å: Chain A: K.385, V.401, T.405, Q.406, S.409, N.410, T.411, N.440, F.443, D.444, N.447, D.528 Chain J: T.47, G.55 Ligands: MG.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.409, A:N.410, A:N.447 Salt bridges: A:K.385, A:K.385, A:D.528 GTP.4: 15 residues within 4Å: Chain E: T.47, G.55 Chain F: K.385, V.401, T.405, Q.406, S.409, N.410, T.411, N.440, F.443, D.444, N.447, D.528 Ligands: MG.5 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:S.409, F:N.410, F:N.410, F:T.411, F:T.411, F:T.411, F:N.447 Salt bridges: F:K.385, F:K.385, F:D.528

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 3 residues within 4Å: Chain A: N.440, D.444 Ligands: GTP.1 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain C: A.16 Chain J: G.56 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain F: N.440, D.444 Ligands: GTP.4 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain F: D.230, E.231, V.530, F.534 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghanim, G.E. et al., Structure of a P element transposase-DNA complex reveals unusual DNA structures and GTP-DNA contacts. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-10-30

Peptides

Transposable element P transposase: AF
Transposable element P transposase: BG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
G

B
B

G
H

Transposable element P transposase

Transposable element P transposase

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