SMTL ID : 6pe3.1

Structure of YcaO enzyme from Methanocaldococcus jannaschii in complex with ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: R.11, T.18, K.68, V.77, S.78, M.81, E.82, E.85, A.158, S.159, G.160, N.161, E.165, H.169, E.173, E.265, Q.268 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:R.11, A:R.11, A:T.18, A:E.85, A:E.85, A:S.159, A:N.161, A:H.169, A:E.173, A:Q.268 Water bridges: A:T.18, A:K.68, A:K.68, A:K.68, A:E.82, A:E.82, A:E.82, A:E.82, A:E.173, A:E.173 Salt bridges: A:K.68, A:K.68, A:K.68, A:H.169, A:H.169 pi-Cation interactions: A:R.11, A:R.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, S.H. et al., Mechanistic Basis for Ribosomal Peptide Backbone Modifications. Acs Cent.Sci. (2019)

Release Date

2020-01-08

Peptides

Uncharacterized protein MJ1094: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein MJ1094

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