- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x OE4: N-{4-[(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)methyl]phenyl}-3-(pyridin-3-yl)azetidine-1-carboxamide(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 7 residues within 4Å:- Chain A: R.39, R.391, C.396, S.397, K.399, K.414, K.422
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.397
- Water bridges: A:R.39, A:R.39, A:R.391, A:S.397, A:F.398, A:K.399, A:K.414, A:K.414, A:K.414, B:D.353
- Salt bridges: A:R.39, A:R.391, A:K.399, A:K.414
PO4.3: 6 residues within 4Å:- Chain A: G.352, G.354, S.381, G.382, G.383
- Chain B: R.391
12 PLIP interactions:11 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:G.352, A:G.354, A:G.382, A:G.383, B:R.391
- Water bridges: A:D.353, A:D.353, A:D.353, A:V.355, A:V.355, A:V.355, A:G.384
PO4.4: 7 residues within 4Å:- Chain A: R.195, A.244, E.245, H.246, R.310, D.312
- Chain B: Y.17
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.244, A:H.246
- Water bridges: A:R.195, A:R.195, A:R.195, A:R.195, B:K.399
- Salt bridges: A:R.195, A:H.246, A:R.310
PO4.6: 5 residues within 4Å:- Chain B: R.39, R.391, S.397, K.399, K.414
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.391, B:R.391, B:F.398, B:K.399, B:K.414, A:R.195
- Salt bridges: B:R.39, B:R.391, B:K.399, B:K.414
PO4.7: 6 residues within 4Å:- Chain B: G.352, D.353, G.354, S.381, G.382, G.383
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.353, B:G.354, B:G.382, B:G.383, A:R.391
- Water bridges: B:D.353, B:D.353, B:S.381, B:G.384
PO4.8: 7 residues within 4Å:- Chain A: Y.17
- Chain B: E.245, H.246, V.276, R.310, D.312
- Ligands: OE4.5
12 PLIP interactions:11 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:H.246, B:D.312, A:Y.17
- Water bridges: B:R.195, B:R.195, B:R.195, B:H.246, B:H.246, B:S.247
- Salt bridges: B:R.195, B:H.246, B:R.310
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Palacios, D.S. et al., Scaffold Morphing Identifies 3-Pyridyl Azetidine Ureas as Inhibitors of Nicotinamide Phosphoribosyltransferase (NAMPT). Acs Med.Chem.Lett. (2019)
- Release Date
- 2019-12-04
- Peptides
- Nicotinamide phosphoribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x OE4: N-{4-[(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)methyl]phenyl}-3-(pyridin-3-yl)azetidine-1-carboxamide(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Palacios, D.S. et al., Scaffold Morphing Identifies 3-Pyridyl Azetidine Ureas as Inhibitors of Nicotinamide Phosphoribosyltransferase (NAMPT). Acs Med.Chem.Lett. (2019)
- Release Date
- 2019-12-04
- Peptides
- Nicotinamide phosphoribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B