SMTL ID : 6pfq.2 (2 other biounits)

Structure of Kluyveromyces marxianus Usb1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Y.105, E.106, N.107, F.114, H.154, S.156 Ligands: GOL.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.106, A:S.156, A:S.156 Water bridges: A:F.108, A:H.154, A:H.154, A:S.156 GOL.2: 8 residues within 4Å: Chain A: Y.105, E.106, Q.146, P.147, V.148, N.152, H.154 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.106 Water bridges: A:S.62, A:N.152 GOL.3: 2 residues within 4Å: Chain A: A.184, S.188 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.188, A:S.188, A:R.195 GOL.4: 2 residues within 4Å: Chain A: R.180, N.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.180 Water bridges: A:W.102, A:N.181, A:N.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nomura, Y. et al., Structural basis for the evolution of cyclic phosphodiesterase activity in the U6 snRNA exoribonuclease Usb1. Nucleic Acids Res. (2020)

Release Date

2019-12-11

Peptides

Uncharacterized protein YLR132C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein YLR132C

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