SMTL ID : 6phb.2 (1 other biounit)

Pfs25 in complex with the human transmission blocking antibody 2530

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain B: P.120, F.210, N.211, E.214, C.215 Chain C: S.131, K.218 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:N.211, B:E.214, C:S.131, C:S.131 Water bridges: B:N.211, B:G.213 EDO.2: 6 residues within 4Å: Chain B: Q.38, K.39, P.40, A.84, T.85, K.104 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.85, B:K.104 Water bridges: B:A.84, B:T.85, B:T.85 EDO.3: 8 residues within 4Å: Chain B: Q.37, K.39, K.45, P.59, R.61, F.62, E.81, D.82 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.37, B:K.39, B:K.45, B:D.82 Water bridges: B:R.61 EDO.4: 3 residues within 4Å: Chain B: T.198, H.199, Q.200 2 PLIP interactions: 2 interactions with chain B Water bridges: B:H.199, B:Q.200 EDO.5: 5 residues within 4Å: Chain B: S.122, D.123, E.124 Chain C: P.127, K.213 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:D.123, B:E.124, B:E.124, C:K.213, C:K.213 Water bridges: B:D.123 EDO.6: 4 residues within 4Å: Chain B: T.207, K.208, S.209 Chain C: K.133 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.209, B:S.209 EDO.7: 6 residues within 4Å: Chain C: S.131, S.132, T.135, L.193, K.218, C.220 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.218 EDO.8: 9 residues within 4Å: Chain A: V.44, K.50, T.51, K.54 Chain B: D.50 Chain C: S.100, Y.101, S.102, F.103 6 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: C:Y.101, C:S.102, A:K.50 Water bridges: B:D.50, A:K.54, A:K.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McLeod, B. et al., Potent antibody lineage against malaria transmission elicited by human vaccination with Pfs25. Nat Commun (2019)

Release Date

2019-10-02

Peptides

25 kDa ookinete surface antigen: A
2530 Antibody Fab, Light Chain: B
2530 Antibody Fab, Heavy Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

C
B

25 kDa ookinete surface antigen

2530 Antibody Fab, Light Chain

2530 Antibody Fab, Heavy Chain

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