SMTL ID : 6pi9.1

Crystal structure of 16S rRNA methyltransferase RmtF in complex with S-Adenosyl-L-homocysteine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: I.55, T.56, F.59, H.90, S.92, R.96, A.121, C.122, G.123, N.125, D.141, I.142, H.143, C.166, D.167, L.168, L.169, M.183, K.184, Q.192 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.56, A:H.90, A:G.123, A:I.142, A:D.167, A:L.168, A:L.169, A:M.183, A:Q.192, A:Q.192 Water bridges: A:C.122, A:N.125, A:M.183 Salt bridges: A:R.96, A:K.184 SAH.2: 20 residues within 4Å: Chain B: I.55, T.56, F.59, H.90, S.92, R.96, A.121, C.122, G.123, N.125, D.141, I.142, H.143, C.166, D.167, L.168, L.169, M.183, K.184, Q.192 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:T.56, B:T.56, B:H.90, B:G.123, B:I.142, B:L.168, B:L.169, B:M.183, B:Q.192, B:Q.192 Water bridges: B:D.119, B:C.122, B:N.125 Salt bridges: B:R.96, B:K.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J., Crystal structure of 16S rRNA methylase RmtF in complex with S-Adenosyl-L-homocysteine. To be Published

Release Date

2019-07-10

Peptides

16S rRNA (guanine(1405)-N(7))-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

16S rRNA (guanine(1405)-N(7))-methyltransferase