SMTL ID : 6pk3.3 (2 other biounits)

Alanine-glyoxylate aminotransferase 1 (AGT1) from Arabidopsis thaliana

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 16 residues within 4Å: Chain A: T.68, G.69, T.70, W.73, F.95, V.144, N.146, E.147, T.148, D.175, V.177, S.178, Q.200, K.201 Chain B: Y.249, T.250 15 PLIP interactions: 11 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.95, A:V.177, A:V.177 Hydrogen bonds: A:T.68, A:T.68, A:G.69, A:T.70, A:T.70, A:T.148, A:Q.200, A:K.201, B:T.250, B:T.250 Water bridges: B:Y.35, B:T.250 PLP.3: 16 residues within 4Å: Chain A: Y.249, T.250 Chain B: T.68, G.69, T.70, W.73, F.95, V.144, N.146, E.147, T.148, D.175, V.177, S.178, Q.200, K.201 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.95, B:V.177, B:V.177 Hydrogen bonds: B:T.68, B:T.68, B:G.69, B:T.70, B:T.70, B:T.148, B:Q.200, B:K.201, A:T.250, A:T.250 Water bridges: A:Y.35, A:T.250

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: P.15, F.95, T.148, L.338, R.347 Chain B: R.36 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: R.36 Chain B: P.15, F.95, T.148, L.338, R.347 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liepman, A.H. et al., Crystal Structure Of Photorespiratory Alanine:Glyoxylate Aminotransferase 1 (AGT1) FromArabidopsis thaliana. Front Plant Sci (2019)

Release Date

2019-10-23

Peptides

Serine--glyoxylate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Serine--glyoxylate aminotransferase

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