SMTL ID : 6pop.3 (2 other biounits)

Crystal structure of DauA in complex with NADP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: F.166, L.167, A.168, W.169, N.170, K.193, S.195, S.196, D.226, G.230, D.231, L.244, I.245, G.246, S.247, V.250, H.253, E.268, L.269, G.270, G.271, C.302, E.400, F.402, L.428, H.465 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:I.245 Hydrogen bonds: A:L.167, A:S.195, A:S.196, A:D.226, A:D.231, A:D.231, A:S.247, A:L.269, A:G.271, A:E.400 Water bridges: A:L.167, A:L.167, A:W.169, A:W.169, A:W.169, A:K.193, A:D.226, A:D.226, A:S.247, A:G.270 Salt bridges: A:K.193, A:K.197 pi-Stacking: A:F.166 NAP.3: 27 residues within 4Å: Chain B: F.166, L.167, A.168, W.169, N.170, K.193, S.195, S.196, D.226, G.230, D.231, L.244, I.245, G.246, S.247, V.250, H.253, E.268, L.269, G.270, G.271, C.302, E.400, F.402, L.428, H.465 Ligands: EDO.6 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:I.245 Hydrogen bonds: B:L.167, B:K.193, B:S.195, B:S.196, B:D.226, B:D.231, B:D.231, B:S.247, B:L.269, B:G.271, B:E.400 Water bridges: B:L.167, B:L.167, B:W.169, B:K.197, B:K.197, B:D.226, B:G.270 Salt bridges: B:K.193 pi-Stacking: B:F.166 pi-Cation interactions: B:K.193

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: NAP.1 No protein-ligand interaction detected (PLIP)

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: I.144 Chain B: S.478, L.479, L.480 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.478, B:L.479, B:L.480 EDO.5: 4 residues within 4Å: Chain B: Y.178, V.303, Y.459, H.465 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.178, B:Y.178 EDO.6: 3 residues within 4Å: Chain B: S.247, V.250 Ligands: NAP.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.247, B:S.247 EDO.7: 4 residues within 4Å: Chain B: T.248, G.270, G.271, A.426 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.270 Water bridges: B:D.425

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hettle, A.G. et al., Insights into the kappa / iota-carrageenan metabolism pathway of some marinePseudoalteromonasspecies. Commun Biol (2019)

Release Date

2019-10-02

Peptides

Aldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Aldehyde dehydrogenase

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