SMTL ID : 6ppr.1

Cryo-EM structure of AdnA(D934A)-AdnB(D1014A) in complex with AMPPNP and DNA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 7 residues within 4Å: Chain B: P.31, G.32, G.34, K.35, S.36, S.37, Y.313 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.32, B:G.34, B:K.35, B:S.36, B:S.36, B:S.36, B:S.36, B:S.37 pi-Stacking: B:Y.313

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 10 residues within 4Å: Chain B: C.807, R.810, A.1021, R.1022, N.1024, C.1027, C.1030, V.1032, C.1036, Q.1039 0 PLIP interactions:

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, N. et al., Structures and single-molecule analysis of bacterial motor nuclease AdnAB illuminate the mechanism of DNA double-strand break resection. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-11-20

Peptides

UvrD/REP helicase: A
ATP-dependent DNA helicase (UvrD/REP): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

UvrD/REP helicase

ATP-dependent DNA helicase (UvrD/REP)

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