SMTL ID : 6prf.1

HIV-1 Protease multiple drug resistant clinical isolate mutant PR20 with GRL-14213A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

homo-dimer

Ligands

9 x Y1: YTTRIUM ION(Non-covalent)

Y1.1: 4 residues within 4Å: Chain A: E.58, D.60 Ligands: Y1.2, Y1.3 No protein-ligand interaction detected (PLIP) Y1.2: 4 residues within 4Å: Chain A: E.58, D.60 Ligands: Y1.1, Y1.3 No protein-ligand interaction detected (PLIP) Y1.3: 4 residues within 4Å: Chain A: E.58, D.60 Ligands: Y1.1, Y1.2 No protein-ligand interaction detected (PLIP) Y1.4: 4 residues within 4Å: Chain A: E.34, D.35, G.78, P.79 No protein-ligand interaction detected (PLIP) Y1.6: 4 residues within 4Å: Chain B: K.45, E.58 Ligands: Y1.7, Y1.9 No protein-ligand interaction detected (PLIP) Y1.7: 5 residues within 4Å: Chain B: E.58, D.60 Ligands: Y1.6, Y1.8, Y1.9 No protein-ligand interaction detected (PLIP) Y1.8: 4 residues within 4Å: Chain B: E.58, D.60 Ligands: Y1.7, Y1.9 No protein-ligand interaction detected (PLIP) Y1.9: 5 residues within 4Å: Chain B: E.58, D.60 Ligands: Y1.6, Y1.7, Y1.8 No protein-ligand interaction detected (PLIP) Y1.10: 1 residues within 4Å: Chain B: K.43 No protein-ligand interaction detected (PLIP)

1 x 7OA: (3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl [(2S,3R)-4-[{[2-(cyclopropylamino)-1,3-benzothiazol-6-yl]sulfonyl}(2-methylpropyl)amino]-1-(3,5-difluorophenyl)-3-hydroxybutan-2-yl]carbamate(Non-covalent)

7OA.5: 23 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, N.30, I.32, V.47, G.48, G.49, I.50 Chain B: R.8, D.25, G.27, A.28, D.29, N.30, I.32, V.47, G.48, G.49, P.81, V.82 22 PLIP interactions: 12 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:L.23, A:I.32, A:V.47, B:A.28, B:I.32, B:V.82 Hydrogen bonds: A:D.25, A:G.27, A:G.27, A:D.29, A:N.30, A:N.30, B:D.29, B:N.30, B:N.30 Water bridges: A:I.50, A:I.50, B:R.8, B:R.8 Salt bridges: A:D.25, B:D.25 Halogen bonds: B:R.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kneller, D.W. et al., Potent antiviral HIV-1 protease inhibitor combats highly drug resistant mutant PR20. Biochem.Biophys.Res.Commun. (2019)

Release Date

2019-09-18

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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