SMTL ID : 6pxa.4 (3 other biounits)

The crystal structure of chloramphenicol acetyltransferase-like protein from Vibrio fischeri ES114 in complex with taurocholic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-trimer

Ligands

3 x TCH: TAUROCHOLIC ACID(Non-covalent)

TCH.1: 19 residues within 4Å: Chain A: F.65, A.88, Q.91, G.92, F.101, P.102, F.103, S.104, E.107, F.108, F.116 Chain B: W.10, L.11, E.12, G.13, Y.30, Y.32, S.34 Ligands: FMT.9 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:A.88, A:P.102, A:P.102, A:F.116, B:L.11, B:Y.32 Hydrogen bonds: A:S.104, A:S.104, A:S.104, B:G.13 TCH.10: 19 residues within 4Å: Chain B: L.51, F.65, Q.91, F.101, P.102, F.103, S.104, E.107, F.108, F.116 Chain C: W.10, L.11, E.12, G.13, Y.30, Y.32, S.34 Ligands: FMT.13, CL.16 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:L.51, B:F.65, B:P.102, B:P.102, B:F.116, C:Y.32 Hydrogen bonds: B:S.104, B:S.104, B:S.104 Water bridges: C:G.13 TCH.15: 17 residues within 4Å: Chain A: W.10, L.11, E.12, G.13, Y.30, Y.32, S.34 Chain C: F.65, A.88, Q.91, G.92, F.101, P.102, F.103, S.104, F.108, F.116 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain C Hydrophobic interactions: A:L.11, A:Y.32, C:A.88, C:P.102, C:P.102, C:F.116 Hydrogen bonds: A:G.13, C:S.104 Water bridges: C:P.102

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: Y.32, S.34 Chain C: H.93 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: E.210, Q.213 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: H.93 Chain B: Y.32, S.34 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain B: H.93 Chain C: Y.32, S.34 Ligands: TCH.10 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Ligands: FMT.14 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: E.201, I.202, S.205, H.207, E.210 Chain C: K.113 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Salt bridges: C:K.113, A:H.207 Hydrogen bonds: A:S.205, A:E.210 SO4.5: 6 residues within 4Å: Chain A: E.133, R.151 Chain B: E.133, R.151 Chain C: E.133, R.151 7 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B, 1 interactions with chain C Hydrogen bonds: A:E.133, B:E.133 Salt bridges: A:R.151, B:R.151, C:R.151 Water bridges: B:E.133, B:E.133

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.6: 4 residues within 4Å: Chain A: D.29, Y.30, W.189, W.191 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.29 FMT.7: 4 residues within 4Å: Chain A: N.157, V.158, N.168, V.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.168 Water bridges: A:A.159 FMT.8: 3 residues within 4Å: Chain A: V.185, E.212, I.216 No protein-ligand interaction detected (PLIP) FMT.9: 2 residues within 4Å: Chain A: P.102 Ligands: TCH.1 No protein-ligand interaction detected (PLIP) FMT.12: 5 residues within 4Å: Chain B: D.29, K.75, W.189, W.191, L.193 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.75 FMT.13: 3 residues within 4Å: Chain B: P.102, F.103 Ligands: TCH.10 No protein-ligand interaction detected (PLIP) FMT.14: 4 residues within 4Å: Chain B: V.153, N.167 Chain C: G.166 Ligands: CL.17 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.167, C:G.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of chloramphenicol acetyltransferase-like protein from Vibrio fischeri ES114 in complex with taurocholic acid. To Be Published

Release Date

2019-09-25

Peptides

Chloramphenicol acetyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

Chloramphenicol acetyltransferase

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