SMTL ID : 6q0e.1

Inferred precursor (UCA) of the human antibody lineage 652 in complex with influenza hemagglutinin head domain of A/Beijing/262/95(H1N1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: A.86, S.87, R.173, G.174, Q.175 Chain C: T.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.87, A:Q.175

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.2: 18 residues within 4Å: Chain B: P.10, P.41, E.84, A.85, D.86, Y.88, G.104, G.105, T.106, K.107, L.108, T.109, G.147, T.168, P.169, Y.177 Chain C: G.45, K.46 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.10, B:K.107

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 6 residues within 4Å: Chain C: S.172, S.175, N.216, K.225, V.226, D.227 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.175, C:S.175, C:N.216 Water bridges: C:K.225, C:K.225 Salt bridges: C:D.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCarthy, K.R. et al., Affinity maturation in a human humoral response to influenza hemagglutinin. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-12-18

Peptides

Hemagglutinin: A
Fab lambda light chain: B
Fab heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Hemagglutinin

Fab lambda light chain

Fab heavy chain

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