SMTL ID : 6q41.1

Atomic resolution crystal structure of a BAA collagen heterotrimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.03 Å

Oligo State

hetero-2-1-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.10 Chain B: P.9, K.10, D.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.10 EDO.2: 4 residues within 4Å: Chain A: K.4, G.5, D.6, P.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.5 Water bridges: A:K.4 EDO.3: 5 residues within 4Å: Chain A: P.43, G.44, P.45, P.46, Y.49 2 PLIP interactions: 2 interactions with chain A Water bridges: A:P.43, A:Y.49 EDO.4: 5 residues within 4Å: Chain A: K.40, G.41, D.42, P.43 Chain C: K.40 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:D.42, B:D.42, A:G.41 EDO.5: 6 residues within 4Å: Chain B: P.34, G.35, P.36, K.37 Chain C: G.38, P.39 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 2 residues within 4Å: Chain A: X.1 Chain B: X.1 No protein-ligand interaction detected (PLIP) GOL.7: 6 residues within 4Å: Chain B: K.40 Chain C: D.42, P.43, G.44, D.45, P.46 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain C Hydrogen bonds: B:K.40, C:P.43, C:D.45, C:D.45, C:D.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jalan, A.A. et al., Atomic resolution crystal structure of an AAB collagen heterotrimer. Nat.Chem.Biol. (2019)

Release Date

2019-12-18

Peptides

Middle and Trailing Chains of the BAA collagen heterotrimer: AB
Leading chain of the BAA collagen heterotrimer: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

Middle and Trailing Chains of the BAA collagen heterotrimer

Leading chain of the BAA collagen heterotrimer