SMTL ID : 6q4z.1

Structure of an inactive variant (D94N) of MPT-2, a GDP-Man-dependent mannosyltransferase from Leishmania mexicana, in complex with beta-1,2-mannobiose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x MAN- BMA: beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)

MAN-BMA.1: 12 residues within 4Å: Chain A: N.62, R.78, W.85, V.86, E.113, N.114, V.131, K.164, Y.256, L.292, F.297, D.317 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.62, A:R.78, A:N.114, A:N.114, A:K.164, A:K.164, A:R.78, A:R.78, A:K.164, A:D.317 Water bridges: A:Y.256, A:H.291, A:F.297, A:Y.61, A:Y.61, A:E.80 Salt bridges: A:K.164 MAN-BMA.2: 11 residues within 4Å: Chain B: N.62, R.78, V.86, E.113, N.114, V.131, K.164, L.292, C.295, F.297, D.317 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.62, B:R.78, B:N.114, B:N.114, B:K.164, B:K.164, B:R.78, B:R.78, B:K.164, B:D.317 Water bridges: B:D.317, B:Y.61, B:V.86, B:E.113 Salt bridges: B:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sernee, M.F. et al., A Family of Dual-Activity Glycosyltransferase-Phosphorylases Mediates Mannogen Turnover and Virulence in Leishmania Parasites. Cell Host Microbe (2019)

Release Date

2019-09-25

Peptides

LmxM MPT-2 D94N: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LmxM MPT-2 D94N