SMTL ID : 6q58.1

Copper loading to a cytosolic copper storage protein from Streptomyces lividans (five coppers)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

15 x CU1: COPPER (I) ION(Non-covalent)

CU1.1: 6 residues within 4Å: Chain A: C.25, C.29, H.97, C.98 Ligands: CU1.2, CU1.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.25, A:H.97, A:C.98 CU1.2: 8 residues within 4Å: Chain A: C.25, C.29, C.41, C.88, C.98 Ligands: CU1.1, CU1.3, CU1.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.41, A:C.98 CU1.3: 9 residues within 4Å: Chain A: C.25, C.41, D.45, C.88, C.98, C.101 Ligands: CU1.1, CU1.2, CU1.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.25, A:C.88 CU1.4: 6 residues within 4Å: Chain A: C.41, D.45, C.84, C.88 Ligands: CU1.2, CU1.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.41, A:C.88 CU1.5: 6 residues within 4Å: Chain B: C.25, C.29, C.41, C.98 Ligands: CU1.6, CU1.7 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.41, B:C.98 CU1.6: 8 residues within 4Å: Chain B: C.25, C.41, D.45, C.88, C.98, C.101 Ligands: CU1.5, CU1.7 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.25, B:D.45, B:C.88 CU1.7: 6 residues within 4Å: Chain B: C.25, C.29, H.97, C.98 Ligands: CU1.5, CU1.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.25, B:H.97, B:C.98 CU1.8: 6 residues within 4Å: Chain C: C.25, C.29, H.97, C.98 Ligands: CU1.9, CU1.11 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.25, C:H.97, C:C.98 CU1.9: 8 residues within 4Å: Chain C: C.25, C.29, C.41, C.88, C.98 Ligands: CU1.8, CU1.10, CU1.11 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.41, C:C.98 CU1.10: 6 residues within 4Å: Chain C: C.41, D.45, E.87, C.88 Ligands: CU1.9, CU1.11 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.41, C:C.88, H2O.11 CU1.11: 9 residues within 4Å: Chain C: C.25, C.41, D.45, C.88, C.98, C.101 Ligands: CU1.8, CU1.9, CU1.10 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.25, C:D.45, C:C.88 CU1.12: 7 residues within 4Å: Chain D: C.25, C.29, C.41, C.98 Ligands: CU1.13, CU1.14, CU1.15 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.41, D:C.98 CU1.13: 6 residues within 4Å: Chain D: C.25, C.29, H.97, C.98 Ligands: CU1.12, CU1.15 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.25, D:H.97, D:C.98 CU1.14: 5 residues within 4Å: Chain D: C.41, D.45, C.88 Ligands: CU1.12, CU1.15 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.41, D:D.45, D:C.88, H2O.15 CU1.15: 9 residues within 4Å: Chain D: C.25, C.41, D.45, C.88, C.98, C.101 Ligands: CU1.12, CU1.13, CU1.14 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.25, D:C.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Straw, M.L. et al., A Histidine Residue and a Tetranuclear Cuprous-thiolate Cluster Dominate the Copper Loading Landscape of a Copper Storage Protein from Streptomyces lividans. Chemistry (2019)

Release Date

2019-07-10

Peptides

Cytosolic copper storage protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

D
D

Cytosolic copper storage protein