SMTL ID : 6q7v.1

Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound 11

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-dimer

Ligands

2 x HLK: ~{N}4-[(4-fluorophenyl)methyl]-6-(trifluoromethyl)pyridine-2,4-diamine(Non-covalent)

HLK.1: 15 residues within 4Å: Chain A: A.12, P.39, I.59, A.78, V.80, I.96, L.117, L.118, F.131, I.146, A.147, P.148, Y.168, I.173, T.175 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.59, A:A.78, A:I.173, A:I.173 Hydrogen bonds: A:L.117, A:T.175, A:T.175 Halogen bonds: A:I.146 HLK.2: 14 residues within 4Å: Chain B: A.12, P.39, I.59, A.78, V.80, I.96, L.117, L.118, F.131, I.146, A.147, P.148, I.173, T.175 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.78, B:I.173, B:I.173 Hydrogen bonds: B:L.117, B:T.175, B:T.175 Halogen bonds: B:I.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zender, M. et al., Flexible Fragment Growing Boosts Potency of Quorum-Sensing Inhibitors against Pseudomonas aeruginosa Virulence. Chemmedchem (2020)

Release Date

2019-11-20

Peptides

Transcriptional regulator MvfR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional regulator MvfR

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